Implement scAR ambient RNA removal

nf-core / scdownstream

A single cell transcriptomics pipeline for QC, integration and making the data presentable

https://nf-co.re/scdownstream

MIT License

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Implement scAR ambient RNA removal #31

Closed nictru closed 5 months ago

nictru commented 5 months ago

This one will be a bit trickier because the method requires two anndata objects (docs): A filtered and a raw one. Both are provided by the nf-core/scrnaseq pipeline. However, we will have to adapt the samplesheet and perform same channel fiddling to make this work

nictru commented 5 months ago

Solved via #40