This one will be a bit trickier because the method requires two anndata objects (docs): A filtered and a raw one. Both are provided by the nf-core/scrnaseq pipeline. However, we will have to adapt the samplesheet and perform same channel fiddling to make this work
nictru
commented
2 weeks ago
This one will be a bit trickier because the method requires two
anndataobjects (docs): A filtered and a raw one. Both are provided by thenf-core/scrnaseqpipeline. However, we will have to adapt the samplesheet and perform same channel fiddling to make this work