Implement pathway analysis using EnrichR

nf-core / scdownstream

A single cell transcriptomics pipeline for QC, integration and making the data presentable

https://nf-co.re/scdownstream

MIT License

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Implement pathway analysis using EnrichR #4

Open nictru opened 2 weeks ago

nictru commented 2 weeks ago

Can be based on the implementation in scFlow

grst commented 2 weeks ago

or go with decoupler-py?

nictru commented 2 weeks ago

You are too fast for me - I am currently creating issues for all the methods that were implemented in the base pipelines, this is one that we would only have to adapt from scFlow. The way I imagine this is to have multiple alternatives for various tasks. You probably know a lot more useful packages than I do, feel free to add them to the corresponding overview issues (#3 in this case)