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nf-core / scdownstream

A single cell transcriptomics pipeline for QC, integration and making the data presentable
https://nf-co.re/scdownstream
MIT License
30 stars 7 forks source link

Add support for h5 input format #48

Closed nictru closed 3 months ago

nictru commented 3 months ago

Description of feature

People will have this when coming directly from cellranger

fbnrst commented 3 months ago

This scanpy tutorial: https://scanpy.readthedocs.io/en/stable/tutorials/basics/clustering.html uses some example h5 files. Maybe those could be used for testing this feature.