nf-core / scdownstream

A single cell transcriptomics pipeline for QC, integration and making the data presentable
https://nf-co.re/scdownstream
MIT License
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Add support for learning an scANVI model based on a given scVI model and cell type annotations #95

Closed nictru closed 2 months ago

nictru commented 2 months ago

Description of feature

This is probably not too hard, some parameters can be recycled from the reference mapping workflow. It would potentially be interesting to allow multiple levels of cell type annotations, but that will be harder to implement.