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nf-core / scrnaseq

A single-cell RNAseq pipeline for 10X genomics data
https://nf-co.re/scrnaseq
MIT License
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Samplesheet Check Bug #304

Closed pablasimarjot closed 3 months ago

pablasimarjot commented 4 months ago

Description of the bug

I am getting this error while running the pipeline in the samplesheet check: ERROR: Please check samplesheet header -> sample,fastq_1,fastq_2 != sample,fastq_1,fastq_2

The samplesheet.csv header matches the requirement, yet it fails the check.

Command used and terminal output

No response

Relevant files

nf-log.log

System information

No response

grst commented 3 months ago

Hi,

this issue should be fixed in the development version. You can give it a try with nextflow run ... -r dev. If it doesn't work, please let me know!