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nf-core / scrnaseq

A single-cell RNAseq pipeline for 10X genomics data
https://nf-co.re/scrnaseq
MIT License
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Make scrnaseq pipeline v2.5.1 compatible with nextflow v22.04.0 #308

Closed asmaali98 closed 6 months ago

asmaali98 commented 7 months ago

Description of feature

Hi, is there any way to make the nf-core/scrnaseq v2.5.1 compatible with the nextflow v22.04.0 by implementing any changes? Has anyone tried this before? Is there any script changes that I can add to make it compatible?

grst commented 6 months ago

Since the nf-core template version 2.9 Nextflow 23.04 is officially required. This was probably mostly due to introducing the nf-validation plugin which is not used by this pipeline yet.

Have you tried just removing this line from the nextflow.config? https://github.com/nf-core/scrnaseq/blob/90cb6a48155248286c85395c53a201c3a31b2258/nextflow.config#L274

We will, however, not try to support older versions of nextflow, therefore, I'm closing this ticket. If you need more help getting to run this on legacy systems, I think slack is the better place to ask for help.