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nf-core / scrnaseq

A single-cell RNAseq pipeline for 10X genomics data
https://nf-co.re/scrnaseq
MIT License
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'star' in genome configrations ignored #327

Open pinin4fjords opened 1 month ago

pinin4fjords commented 1 month ago

Description of the bug

Just a suggestion to maybe prune the star entries from the iGenomes config for this workflow, since they're not used for STARSolo? Maybe other irrelevant entries too, but the STAR one is potentially misleading.

Command used and terminal output

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Relevant files

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System information

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grst commented 1 month ago

maybe they should be used for starsolo instead? I think starsolo just works with regular star indices