Open wzheng0520 opened 3 weeks ago
Dear @wzheng0520,
if you push this into a branch and make a (draft) PR, I am happy to take a look. In principle I am open to such a feature, but in the end I'll need to decide if the additional complexity is worth it. It's always a trade-off between adding new features and ensuring the pipeline is maintainable long-term.
Hi @grst
Thanks so much, I will push today and let you know once I completed, so you could take time to review it!
Sincerely Winnie Zheng
Description of feature
Hi,
I’d like to implement an
auto-detection module
to automatically identify the chemistry type for scRNA-seq libraries. This feature would help address scenarios where multiple library chemistries are mixed. By selecting "auto" for the chemistry parameter, the pipeline could perform internal detection to assign the appropriate chemistry type for downstream processing.Since
CellRanger
already has an internal function for this, it could also benefit tools likeAlevin
,Kallisto
, andSTAR
. I’ve developed an internal version based onv2.7.1
. Would it be possible to push this as a new branch, or would it be preferable for me to make the updates on the currentdev
branch to support a future release?Sincerely Winnie Zheng