nf-core / seqinspector

QC pipeline to inspect your sequences
https://nf-co.re/seqinspector
MIT License
7 stars 21 forks source link

add preseq to nf-core/seqinspector #27

Open FranBonath opened 1 month ago

ctuni commented 3 weeks ago

I would like to start with this issue but preseq modules such as ccurve or lcextrap use BAM files as input; what should the strategy be to include this? Should the pipeline accept a sample sheet of BAM files instead of FASTQ files? And depending on the type of samplesheet follow a differential flow: FASTQ as input: fastqc, multiqc, etc || BAM as input: preseq, multiqc, etc?