Open genio0815 opened 4 years ago
if you edit from dict.keys()
to list(dict.keys())
, the error will go away
just encountered the same error. was going to add specifically change line 199
currently: exonRank = exon.keys()
should be: exonRank = list(exon.keys())
Is correct on line 92 but just missed there.
Hi,
running
leads to
as also reported in issue https://github.com/nf-core/slamseq/issues/13
However the reason for that seems to be an incomplete py3 compatibility in gtf2bed.py. The py2=>py3 conversion as begun in https://github.com/t-neumann/slamseq/commit/47c9439481fe297fe322eb91f34c151c0399fe07#diff-70d6ae98392251549ca5b2101e582aaa is (at least) also missing in line 199
cheers