Open yadavbha opened 2 years ago
I got the following error,
Error executing process > 'gtf2bed (mmus.GRCm38.100.gtf)'
Caused by: Process gtf2bed (mmus.GRCm38.100.gtf) terminated with an error exit status (1)
gtf2bed (mmus.GRCm38.100.gtf)
Command executed:
gtf2bed.py mmus.GRCm38.100.gtf | sort -k1,1 -k2,2n > mmus.GRCm38.100.3utr.bed
Command exit status: 1
Command output: (empty)
Command error: Traceback (most recent call last): File "/slamseq/bin/gtf2bed.py", line 43, in chr, source, feature, start, end, score, strand, frame, attributes = line.rstrip().split('\t') ValueError: not enough values to unpack (expected 9, got 1)
I got the following error,
Error executing process > 'gtf2bed (mmus.GRCm38.100.gtf)'
Caused by: Process
gtf2bed (mmus.GRCm38.100.gtf)terminated with an error exit status (1)Command executed:
gtf2bed.py mmus.GRCm38.100.gtf | sort -k1,1 -k2,2n > mmus.GRCm38.100.3utr.bed
Command exit status: 1
Command output: (empty)
Command error: Traceback (most recent call last): File "/slamseq/bin/gtf2bed.py", line 43, in
chr, source, feature, start, end, score, strand, frame, attributes = line.rstrip().split('\t')
ValueError: not enough values to unpack (expected 9, got 1)