Closed andrewdchen closed 7 months ago
The pipeline on my data ran successfully but I'm missing several results folders including edgeR.
Currently I only have the output folders:
fastp genome index pipeline_info
I'm only skipping fastqc and multiqc in the pipeline command. Seems like the awsmegatests are also missing a couple of output folders.
nextflow run nf-core/smrnaseq \ -r 2.2.3 \ -profile singularity \ --input clean_samplesheet.csv \ --skip_fastqc \ --skip_multiqc \ --genome 'GRCh37' \ --mirtrace_species 'hsa' \ --protocol 'illumina' \ --outdir 'Processed'
No response
Nextflow version: 23.04.1 Hardware: HPC Executor: Sun Grid Engine Container engine: Singularity OS: AlmaOS 8 Linux Version of nf-core/smrnaseq: v2.2.3-g18d6c84
Dev should be fine now
Description of the bug
The pipeline on my data ran successfully but I'm missing several results folders including edgeR.
Currently I only have the output folders:
I'm only skipping fastqc and multiqc in the pipeline command. Seems like the awsmegatests are also missing a couple of output folders.
Command used and terminal output
Relevant files
No response
System information
Nextflow version: 23.04.1 Hardware: HPC Executor: Sun Grid Engine Container engine: Singularity OS: AlmaOS 8 Linux Version of nf-core/smrnaseq: v2.2.3-g18d6c84