nf-core / smrnaseq

A small-RNA sequencing analysis pipeline
https://nf-co.re/smrnaseq
MIT License
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Pipeline not using channels for all inputs #390

Closed nschcolnicov closed 2 months ago

nschcolnicov commented 2 months ago

The pipeline sometimes uses groovy functions to define file() or value variables instead of using channels. The conditional statements and some of the handling is built around using variables instead of channels, so this ticket is a little bit of a mess to address. This is not something that breaks the pipeline, but it is also not good practices.

nschcolnicov commented 2 months ago

PR merged!