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nf-core / taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
https://nf-co.re/taxprofiler
MIT License
128 stars 34 forks source link

Classifier for Nanopore reads: BugSeq-V2 #121

Closed sofstam closed 7 months ago

sofstam commented 2 years ago

Also, this may be out-of-scope until after a stable release, but a bespoke implementation of BugSeq-V2 seems worth investigating given its performance in that preprint.

Originally posted by @gregmedlock in https://github.com/nf-core/taxprofiler/issues/22#issuecomment-1072458081

sofstam commented 7 months ago

Since this is a GUI tool, we shall consider it as a candidate for nanopore in upcoming releases instead.

jfy133 commented 7 months ago

It's a web online platform, so I doln't think it'll ever be possible