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nf-core / taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
https://nf-co.re/taxprofiler
MIT License
128 stars 34 forks source link

Update usage.md #341

Closed husensofteng closed 1 year ago

husensofteng commented 1 year ago

Updated Bracken and Kraken2 database sections to reflect current contents in the BenLangmead Reference Indexes. Also, removed *.kraken files in the expected files section that are no longer needed to run Bracken.

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github-actions[bot] commented 1 year ago

This PR is against the master branch :x:

Hi @husensofteng,

It looks like this pull-request is has been made against the husensofteng/taxprofiler master branch. The master branch on nf-core repositories should always contain code from the latest release. Because of this, PRs to master are only allowed if they come from the husensofteng/taxprofiler dev branch.

You do not need to close this PR, you can change the target branch to dev by clicking the "Edit" button at the top of this page. Note that even after this, the test will continue to show as failing until you push a new commit.

Thanks again for your contribution!