Closed jfy133 closed 1 year ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 952c2df
+| ✅ 157 tests passed |+
!| ❗ 1 tests had warnings |!
Oh, actually, just looked at the failing run. It seems that a single profile is passed to taxpasta merge
which then fails. So we need to apply the same logic as for other profilers.
And I should look at that profile. It seems like it's maybe completely empty and taxpasta doesn't like that. Might need to apply a minor fix to taxpasta. (Failing on a completely empty profile is not unreasonable, though.)
Hmm ok maybe a bug both ends (agree not unreasonable but just staying: 'your profile is empty ' would be a better message).
If everyone behaves I'll try and investigate the empty file today
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).