Closed alimalrashed closed 11 months ago
We need to add a check that if any of
taxpasta_add_name = false
taxpasta_add_rank = false
taxpasta_add_lineage = false
taxpasta_add_idlineage = false
taxpasta_add_ranklineage = false
Is supplied, that --taxpasta_taxonomy_dir
is not null
, and it is null we should error out
Description of the bug
Hi everyone, I'm trying to add taxpasta parameters (e.g. --taxpasta_add_name, --taxpasta_add_rank) but I keep getting a command error exit status of 2 with the error being that a taxonomy is required. I asked on Slack and @jfy133 has suggested that it may be something to do with Taxonomy nodes/names dump files? Thanks!
Command used and terminal output
Relevant files
No response
System information
Taxprofiler version 1.1.0 Docker Linux