nf-core / taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
https://nf-co.re/taxprofiler
MIT License
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Profiler request: MetaPhlAn3 #4

Closed jfy133 closed 2 years ago

jfy133 commented 2 years ago

Description of feature

MetaPhlAn (Metagenomic Phylogenetic Analysis) is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data. MetaPhlAn relies on unique clade-specific marker genes identified from ~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing:

https://huttenhower.sph.harvard.edu/metaphlan/

jfy133 commented 2 years ago

https://github.com/nf-core/taxprofiler/pull/29