nf-core / taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
https://nf-co.re/taxprofiler
MIT License
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Allow multiple bracken profiles with different `-l` levels from the same kraken2 report #410

Open MajoroMask opened 8 months ago

MajoroMask commented 8 months ago

Description of feature

Bracken allows user to get report on certain taxonomy level from a single kraken2 report via bracken -l LEVEL option. Introducing this feature into TaxProfiler can be useful.

TODO

MajoroMask commented 8 months ago

It seems it has to be on hold until these two got fixed: