Open sofstam opened 5 months ago
nf-core lint
overall result: Failed :x:Posted for pipeline commit 614b4b6
+| ✅ 187 tests passed |+
-| ❌ 8 tests failed |-
Thanks for the quick review.
Tests are not passing for taxpasta, the output formats are the same in the newest version so it should not have been an issue, looking closer into this.
It could be the database we have is incompatible? Could you check the actual ganon report files look OK?
I tested locally with the minimal data and no issue with taxpasta
nextflow run main.nf -profile test,docker --run_ganon --outdir test_ganon_output -resume
The ganon files look ok. I will run the pipeline with test_full
profile.
This PR closes #401
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).