CAT - Contig Annotation Tool custom database

nf-core / test-datasets

Test data to be used for automated testing with the nf-core pipelines

https://nf-co.re

MIT License

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Open maxibor opened 4 months ago

maxibor commented 4 months ago

As CAT database is quite large, a custom one would be needed to test nf pipelines/wf.

This is apparently feasible to generate a small enought database for CI purposes https://github.com/dutilh/CAT/issues/65, and would already be needed for https://github.com/nf-core/mag/issues/501

maxibor commented 4 months ago

For future reference: here is a very small db using pdb accession