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nf-core / test-datasets

Test data to be used for automated testing with the nf-core pipelines
https://nf-co.re
MIT License
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Add dedicated 'metagenome' organism directory with metagenome related files #1169

Closed jfy133 closed 7 months ago

jfy133 commented 8 months ago

I'm increasingly coming across cases where the current test-data 'organism' structure does not work with metagenomic tools, such as the repeated genome.fasta files causing name conflicts.

Furthermore, as metagenomics are dealing with multiple organisms, I need combinations of multiple organisms e.g. with taxonomies.

This PR adds a dedicated metagenome folder that provides a space for 'minimal' metagenomes related files of just 2 organisms, including compatible names.

It also updates the README to include missing entries, where I know what they are...

jfy133 commented 8 months ago

Looks very reasonable to me. We should just make sure somehow we don't have the fastas etc somewhere twice.

These are technically there twice :\, but gneome.fasta twice doesn't work well when trying to stage them together in one directory :grimacing:

jfy133 commented 7 months ago

Ok I have the two :heavy_check_mark: so proceeding even if it's sarek focused :eyes: