Closed asp8200 closed 6 months ago
Needed for tests of new functionality in Sarek for handling fastq.gz.spring-files as input. https://github.com/nf-core/sarek/pull/1534
From our usual test_1.fastq.gz and test_2.fastq.gz, I got
test_1.fastq.gz
test_2.fastq.gz
test_1.fastq.gz.spring test_2.fastq.gz.spring test_R1_R2.fastq.gz.spring
and they were made with spring 1.1.1 like this:
spring -c -g -i test_1.fastq.gz -o test_1.fastq.gz.spring spring -c -g -i test_2.fastq.gz -o test_2.fastq.gz.spring spring -c -g -i test_1.fastq.gz test_2.fastq.gz -o test_R1_R2.fastq.gz.spring
@maxulysse : You sure this should have gone to the branch sarek3? It seems that all the other test-configs over in the sarek-repo are fetching data from the modules-branch.
sarek3
modules
Yeah it's fine
Needed for tests of new functionality in Sarek for handling fastq.gz.spring-files as input. https://github.com/nf-core/sarek/pull/1534
From our usual
test_1.fastq.gz
andtest_2.fastq.gz
, I gotand they were made with spring 1.1.1 like this: