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nf-core / test-datasets

Test data to be used for automated testing with the nf-core pipelines
https://nf-co.re
MIT License
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pypgx testing data #1338

Closed Jorisvansteenbrugge closed 1 month ago

Jorisvansteenbrugge commented 1 month ago

Hi,

I added a small temporary test dataset in data/delete_me on the modules branch to test multiple new nf-core modules (e.g., https://github.com/nf-core/modules/pull/6720) for the tool PyPGx. PyPGx requires reads to be mapped to a different region than is currently represented in the human illumina bam files in the test-dataset repository. I have started a thread on Slack to discuss the best way to test this tool. However, to avoid delaying the creation of the modules, I have uploaded some temporary test data to be used in the meantime.

Jorisvansteenbrugge commented 1 month ago

@jfy133 Thank you, I moved the data to the homo_sapiens folder, and I updated the README in that same folder. Just to be sure, is that the README you were referring to?

jfy133 commented 1 month ago

Yes, but also in the main module README.

I don't think you need a specific pypgx directory though, the files can go in genome and illumina folders respecively, the formats are not specific to pypgx

Jorisvansteenbrugge commented 1 month ago

@jfy133 oke perfect, your comments should be addressed now!