Closed Aratz closed 8 months ago
Also see #2751 and the lengthy discussion in Slack.
Bottom line: It is a feature, not a bug, but went out of sync with updates to Nextflow. As of now, we can only reintroduce the library or one needs to manually rename some images :-\
Should be fixed with the nf-core tools release 2.13.1 today! 👌🎉
(I would still appreciate seeing an update to Nextflow as well at some point, but for now symlinks are created so that the images are found nonetheless.)
Description of the bug
This is a follow up of https://github.com/nf-core/demultiplex/issues/164. I think I've nailed down the problem to nf-core/tools not saving singularity images with the right name when using
nf-core download
:If the container is specified with e.g.
container "nf-core/bclconvert:4.2.4"
, tools will download it asnf-core-bclconvert-4.2.4.img
but nextflow expectsquay.io-nf-core-bclconvert-4.2.4.img
.Command used and terminal output
System information
nf-core, version 2.11.1 nextflow, version 23.04.3 build 5875 nf-core/demultixplex, version 1.4.0