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nf-core / tools

Python package with helper tools for the nf-core community.
https://nf-co.re
MIT License
244 stars 192 forks source link

Fix nf-core pipelines sync #3185

Closed mirpedrol closed 2 months ago

mirpedrol commented 2 months ago

The old nf-core sync command was crashing, now it is fixed.

The new nf-core pipelines sync command was not taking into account the template information from .nf-core.yml and was also crashing for pipelines without the template information. Now it uses this info to sync a pipeline.

Testing PRs syncing nf-core and custom pipelines can be found here: nf-core and custom and custom with a new modification