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nf-core / tools

Python package with helper tools for the nf-core community.
https://nf-co.re
MIT License
242 stars 191 forks source link

📦 Add new command nf-core rocrate to create a Research Object (RO) crate for a pipeline (continuation from #2680) [skip changelog] #3240

Closed mashehu closed 2 days ago

mashehu commented 1 month ago

2680 was auto-merged too fast. Continuing the work with this PR

mashehu commented 1 month ago

@nf-core-bot update snapshots

codecov[bot] commented 3 days ago

Codecov Report

Attention: Patch coverage is 80.63063% with 43 lines in your changes missing coverage. Please review.

Project coverage is 75.72%. Comparing base (ba332b6) to head (43287c6). Report is 18 commits behind head on dev.

Files with missing lines Patch % Lines
nf_core/pipelines/rocrate.py 86.26% 25 Missing :warning:
nf_core/commands_pipelines.py 11.76% 15 Missing :warning:
nf_core/__main__.py 87.50% 1 Missing :warning:
nf_core/modules/modules_json.py 50.00% 1 Missing :warning:
nf_core/pipelines/lint/files_exist.py 83.33% 1 Missing :warning:
Additional details and impacted files

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