nf-core / tools

Python package with helper tools for the nf-core community.
https://nf-co.re
MIT License
242 stars 191 forks source link

1929: local modules use remote format from template #3256

Open awgymer opened 3 weeks ago

awgymer commented 3 weeks ago

PR checklist

codecov[bot] commented 3 weeks ago

Codecov Report

Attention: Patch coverage is 51.19048% with 41 lines in your changes missing coverage. Please review.

Project coverage is 75.29%. Comparing base (eb4c237) to head (31cffdd). Report is 9 commits behind head on dev.

Files with missing lines Patch % Lines
nf_core/modules/lint/__init__.py 0.00% 13 Missing :warning:
nf_core/modules/lint/module_tests.py 33.33% 8 Missing :warning:
nf_core/components/nfcore_component.py 60.00% 6 Missing :warning:
nf_core/modules/lint/meta_yml.py 33.33% 4 Missing :warning:
nf_core/components/create.py 81.25% 3 Missing :warning:
nf_core/modules/lint/environment_yml.py 25.00% 3 Missing :warning:
...f_core/pipelines/lint/local_component_structure.py 84.61% 2 Missing :warning:
nf_core/components/lint/__init__.py 66.66% 1 Missing :warning:
nf_core/subworkflows/lint/subworkflow_tests.py 50.00% 1 Missing :warning:
Additional details and impacted files

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awgymer commented 3 weeks ago

There are currently no tests at all implemented for the linting of local modules or subworkflows 😱