Closed ewels closed 5 years ago
Ah yeah, the other problem with the current setup is that specifying -with-singularity
will have a different effect to -profile singularity
. It would be best if we could define the container in some way that allows the expected behaviour for nextflow default flags.
I'm not sure what this issue is about any more. I think it might be outdated now that we dropped ambitions of using singularity-hub and are only referencing dockerhub addresses...?
From @ewels on July 30, 2018 6:8
Singularity and docker container addresses are currently not handled in the best way. This is made difficult by the fact that we have
nfcore
on dockerhub andnf-core
on singularity hub 🤦♂️This issue continues discussion started on PR https://github.com/nf-core/cookiecutter/pull/42
Copied from original issue: nf-core/cookiecutter#47