Better handling of container addresses

nf-core / tools

Python package with helper tools for the nf-core community.

https://nf-co.re

MIT License

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Better handling of container addresses #98

Closed ewels closed 5 years ago

ewels commented 6 years ago

From @ewels on July 30, 2018 6:8

Singularity and docker container addresses are currently not handled in the best way. This is made difficult by the fact that we have nfcore on dockerhub and nf-core on singularity hub 🤦‍♂️

This issue continues discussion started on PR https://github.com/nf-core/cookiecutter/pull/42

Copied from original issue: nf-core/cookiecutter#47

ewels commented 6 years ago

Ah yeah, the other problem with the current setup is that specifying -with-singularity will have a different effect to -profile singularity. It would be best if we could define the container in some way that allows the expected behaviour for nextflow default flags.

ewels commented 5 years ago

I'm not sure what this issue is about any more. I think it might be outdated now that we dropped ambitions of using singularity-hub and are only referencing dockerhub addresses...?