nf-core / vipr

Assembly and intrahost / low-frequency variant calling for viral samples
https://nf-co.re/vipr
MIT License
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Add support for single-end read data #7

Open andreas-wilm opened 6 years ago

ewels commented 6 years ago

I recommend using a params.singleEnd to specify this rather than guessing from the file pattern (past experience tells me that this is easy to get wrong).

Example channel: https://github.com/nf-core/chipseq/blob/485fc2971c85c534bf9277e65959ddc8a17751ad/main.nf#L160-L162