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nf-core / vipr

Assembly and intrahost / low-frequency variant calling for viral samples
https://nf-co.re/vipr
MIT License
14 stars 12 forks source link

create BWA index for contamination reference if missing #8

Open andreas-wilm opened 6 years ago

ewels commented 6 years ago

Feel free to steal from nf-core/chipseq: https://github.com/nf-core/chipseq/blob/485fc2971c85c534bf9277e65959ddc8a17751ad/main.nf#L269-L290