Unable to download the python script

[Mahendra687]

Description of the bug

Hi, wanted to download the Python script unfortunately got the error whenever I ran the following command: "wget -L https://raw.githubusercontent.com/nf-core/viralrecon/master/bin/fastq_dir_to_samplesheet.py ./fastq_dir_to_samplesheet.py data samplesheet.csv"

Please help me on this issue!

Thank you,

Command used and terminal output

ms@Extensa:~/dataset/data$ wget -L https://raw.githubusercontent.com/nf-core/viralrecon/master/bin/fastq_dir_to_samplesheet.py ./fastq_dir_to_samplesheet.py data samplesheet.csv
--2023-11-04 00:50:07--  https://raw.githubusercontent.com/nf-core/viralrecon/master/bin/fastq_dir_to_samplesheet.py
Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 49.44.79.236, 2405:200:1607:2820:41::36
Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|49.44.79.236|:443... failed: Connection refused.
Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|2405:200:1607:2820:41::36|:443... failed: Network is unreachable.
--2023-11-04 00:50:20--  http://./fastq_dir_to_samplesheet.py
Resolving . (.)... failed: No address associated with hostname.
wget: unable to resolve host address ‘.’
--2023-11-04 00:50:20--  http://data/
Resolving data (data)... failed: Temporary failure in name resolution.
wget: unable to resolve host address ‘data’
--2023-11-04 00:50:20--  http://samplesheet.csv/
Resolving samplesheet.csv (samplesheet.csv)... failed: Name or service not known.
wget: unable to resolve host address ‘samplesheet.csv’

Relevant files

No response

System information

OS Linux ubuntu 22.04

[tavareshugo]

Dear @Mahendra687, those should be two different commands:

• First download the script:

  wget -L https://raw.githubusercontent.com/nf-core/viralrecon/master/bin/fastq_dir_to_samplesheet.py 

• Then run the script on your data folder:

  python fastq_dir_to_samplesheet.py data samplesheet.csv

If this solves the problem, consider closing the issue.

[svarona]

@Mahendra687 did you manage to do it? Should we close this issue?

[Mahendra687]

Would you like us to close this issue?

Yeah,@svarona issue got resolved need to close it here. Thanks:)