TOOLKIT: Add broken up pipeline tests - Githubissues

nf-microbe / toolkit

A Nextflow toolkit for running microbe-related analyses that follows nf-core best practices.

MIT License

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TOOLKIT: Add broken up pipeline tests #25

Open CarsonJM opened 4 days ago

CarsonJM commented 4 days ago

[ ] Test ena/spire/ncbi/logan chunked download
[ ] Test read preprocessing
[ ] Test read assembly
[ ] Test MGE identification/filtering
[ ] Test MGE annotation
[ ] Test MGE abundance/microdiversity
[ ] Full stub test
[ ] Partial real test (no large downloads)
[ ] Test nothing