TOOLKIT: Add read assembly - Githubissues

nf-microbe / toolkit

A Nextflow toolkit for running microbe-related analyses that follows nf-core best practices.

MIT License

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TOOLKIT: Add read assembly #3

Closed CarsonJM closed 1 month ago

CarsonJM commented 1 month ago

nf-microbe/modules modules to download:

[x] megahit
[x] spades
[x] plass/penguin

nf-microbe/modules modules to download:

[x] fastq_readassembly_fasta

nf-microbe/modules subworkflows to update:

[x] utils_nfmicrobe_functions

Tests to update:

[x] Pipeline: fastq_full

Misc

[x] Add nextflow.config files to megahit, spades, penguin, and fastq_readassembly_fasta