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nf-osi / nf-metadata-dictionary

Versioned releases of the NF metadata dictionary.
https://nf-osi.github.io/nf-metadata-dictionary/
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Created prelim yaml file for PortalPublication #542

Open aditya-nath-sage opened 1 week ago

aditya-nath-sage commented 1 week ago

Created a quick yaml file for PortalPublication

github-actions[bot] commented 1 week ago

PR Preview Action v1.4.8 :---: :rocket: Deployed preview to https://nf-osi.github.io/nf-metadata-dictionary/pr-preview/pr-542/ on branch gh-pages at 2024-11-21 22:57 UTC

github-actions[bot] commented 1 week ago

Test Suite Report 24.7.2

Template Generation

template result link
ClinicalAssayTemplate :smile: template link
EpigeneticsAssayTemplate :smile: template link
FlowCytometryTemplate :smile: template link
GenomicsAssayTemplate :smile: template link
GenomicsAssayTemplateExtended :smile: template link
HumanCohortTemplate :x:
ImagingAssayTemplate :smile: template link
LightScatteringAssayTemplate :x:
MethylationArrayTemplate :smile: template link
MRIAssayTemplate :smile: template link
PharmacokineticsAssayTemplate :smile: template link
PlateBasedReporterAssayTemplate :smile: template link
ProcessedAlignedReadsTemplate :smile: template link
ProcessedExpressionTemplate :smile: template link
ProcessedVariantCallsTemplate :x:
ProteomicsAssayTemplate :smile: template link
ProtocolTemplate :smile: template link
RNASeqTemplate :smile: template link
ScRNASeqTemplate :smile: template link
UpdateMilestoneReport :smile: template link
WESTemplate :smile: template link
WGSTemplate :smile: template link

Manifest Validation

manifest result expectation
GenomicsAssayTemplate_0.csv :smile: Lists can be blank if attr not required using ‘list like’ rule
GenomicsAssayTemplate_1.csv :smile: Mixing blanks and regular list values works
GenomicsAssayTemplate_2.csv :smile: Conditional validation for attributes is currently not supported
GenomicsAssayTemplate_control.csv :smile: There should be no issue with this template.
ScRNASeqTemplate_0.csv :smile: Single list val works by using ‘list like’ rule
ScRNASeqTemplate_1.csv :smile: Fail because of missing data in required field libraryStrand

Manifest Submission

manifest pass
GenomicsAssayTemplate_0.csv :smile:
GenomicsAssayTemplate_1.csv :smile:
GenomicsAssayTemplate_2.csv :smile:
GenomicsAssayTemplate_control.csv :smile:
ScRNASeqTemplate_0.csv :x: