Closed floWetzels closed 1 year ago
The same happened with my own test ARC when I wanted to export the ARC on my OS:
OS and framework information: OS: Windows 10 Pro OS Version: 21H1
I think the duplication issue is fixed. However, arc study list
stills throws the error
WARNING: The ARC contains following registered studies that have no associated file:
check arc s list
on freshly re-built https://git.nfdi4plants.org/brilator/samplearc_rnaseq
Describe the bug When I run
arc export
on the proteomics samplearc (https://git.nfdi4plants.org/martinkuhl/SampleARC_Proteomics), the output json file contains two studies (see first screenshot):01Minimal
with filename01Minimal/isa.study.xlsx
assay1/isa.assay.xlsx
However, the assay is actually registered in the study, as can be seen with
arc a list
orarc s list
(see second screenshot). Therefore, there should only be one study containing the only assay. The study01Minimal
containsassay1
in the json output, but whithout a process sequence attached, whereas the assay itself (and therefore the second study) does contain the process sequence.To Reproduce Run
arc export
on the proteomics samplearc (https://git.nfdi4plants.org/martinkuhl/SampleARC_Proteomics).Expected behavior The output should only contain one assay and one study, with the only assay being part of the only study.
Screenshots
OS and framework information (please complete the following information):