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nfdi4plants / ARCCommander

Tool to manage your ARCs
MIT License
11 stars 9 forks source link

[BUG] Assays don't get registered in the isa.study.xlsx file, only in the isa.investigation.xlsx file #145

Closed Hannah-Doerpholz closed 2 years ago

Hannah-Doerpholz commented 2 years ago

Describe the bug When creating a test ARC I and an assay is initialized an registered to a study it appears in the isa.invesetigation.xlsx file in the STUDY section. However, it does not appear in the isa.study.xlsx file in the STUDY ASSAYS section.

To Reproduce Steps to reproduce the behavior:

  1. Create an ARC according to the ARC Commander Wiki.
  2. Add a new study arc s add (here: IDS001)
  3. Add a new assay registered to the study arc a add (here: IDA001).

Expected behavior I expected the information from the isa.assay.xlsx file (measurement type, file name, ...) to be added to the isa.study.xlsx file as well.

Screenshots Screenshot (19) Left: isa.study.xlsx (from study IDS001) -> no assay information included Right: isa.assay.xlsx (from assay IDA001)

Screenshot (20) isa.investigation.xlsx

Screenshot (21)

OS and framework information (please complete the following information):

Additional Information In the output JSON file the assay is correctly assigned to the study.

Screenshot (22)

Hannah-Doerpholz commented 2 years ago

Sorry about the issue, I wasn't sure that the registration worked properly, but I learned that it does so this issue is irrelevant.