Describe the bug
When I tried to export the rnaseq sample ARC of Dominik i noticed an issue in the output.json file. In the last study (7th study) in the assays section (in the second process: process 3ASY01_RNASeq_0) the inputs are duplicated (12 inputs instead of 6) and contain factor information from the previous process of the process sequence (2EXT01_RNA_0).
go to line 2012 in the json-formatted output file to get to the inputs section
Expected behavior
As there are only 6 lines for the mentioned assay, I also only expected 6 input entries, one for each input source. In the outputs of this process there are only the expected 6 outputs with the factor information from this process (this structure is confusing as well, I opened a second issue for this).
Screenshots
OS and framework information (please complete the following information):
OS: Ubuntu 20.04.5 LTS
ARCcommander version: v0.3.2
Additional context
Perhaps information is duplicated because in the first process the outputs are "samples" while in the second process the outputs from the first are the new inputs and thus labeled with "source"?
HLWeil
commented
1 year ago
Describe the bug When I tried to export the rnaseq sample ARC of Dominik i noticed an issue in the output.json file. In the last study (7th study) in the assays section (in the second process: process 3ASY01_RNASeq_0) the inputs are duplicated (12 inputs instead of 6) and contain factor information from the previous process of the process sequence (2EXT01_RNA_0).
To Reproduce Steps to reproduce the behavior:
Expected behavior As there are only 6 lines for the mentioned assay, I also only expected 6 input entries, one for each input source. In the outputs of this process there are only the expected 6 outputs with the factor information from this process (this structure is confusing as well, I opened a second issue for this).
Screenshots
OS and framework information (please complete the following information):
Additional context Perhaps information is duplicated because in the first process the outputs are "samples" while in the second process the outputs from the first are the new inputs and thus labeled with "source"?