[BUG] ARCitect cannot commit large amount of files at once

[LibraChris]

OS and framework information (please complete the following information):

• Edition Windows 10 Enterprise
• Version 22H2
• OS build 19045.4046
• Arcitect version 0.0.31

Describe the bug

• [ ] Trying to commit a large amount of files at once causes the commit-window to finish instantly without actually commiting the files
• [ ] Restarting the arc, pc or trying this with a fresh copy of the arc did not solve this problem, but commiting individually step by step does work
• [ ] the file list will be provided below

[LibraChris]

│   runs│   WholeCell
│   converted.txt
│   pipeline2.ps1
│
├───msParams
│       Chlamy_JGI5_5_QProt.fasta
│       convertToPracticalInput.fsx
│       labeldQuantParams.json
│       mzMLToMzLiteParams.json
│       peptideDBParams.json
│       peptideSpectrumMatchingParams.json
│       powershellTest.txt
│       ProteinInferenceParams.json
│       pSMStatisticsParams.json
│       pSMStatisticsParams_new.json
│       QuantificationParams.json
│       QuantificationParams_unlabeled.json
│
├───mzlite
│       MzMLToMzLite_log.txt
│       WC_Gr1_FBPHA1.mzlite
│       WC_Gr1_FBPHA16.mzlite
│       WC_Gr1_FBPHA16_log.txt
│       WC_Gr1_FBPHA1_log.txt
│       WC_Gr1_FBPHA4.mzlite
│       WC_Gr1_FBPHA4_log.txt
│       WC_Gr1_FBPHA64.mzlite
│       WC_Gr1_FBPHA64_log.txt
│       WC_Gr1_SBPHA1.mzlite
│       WC_Gr1_SBPHA16.mzlite
│       WC_Gr1_SBPHA16_log.txt
│       WC_Gr1_SBPHA1_log.txt
│       WC_Gr1_SBPHA4.mzlite
│       WC_Gr1_SBPHA4_log.txt
│       WC_Gr1_SBPHA64.mzlite
│       WC_Gr1_SBPHA64_log.txt
│       WC_Gr1_SxF1.mzlite
│       WC_Gr1_SxF16.mzlite
│       WC_Gr1_SxF16_log.txt
│       WC_Gr1_SxF1_log.txt
│       WC_Gr1_SxF4.mzlite
│       WC_Gr1_SxF4_log.txt
│       WC_Gr1_SxF64.mzlite
│       WC_Gr1_SxF64_log.txt
│       WC_Gr1_UV1.mzlite
│       WC_Gr1_UV16.mzlite
│       WC_Gr1_UV16_log.txt
│       WC_Gr1_UV1_log.txt
│       WC_Gr1_UV4.mzlite
│       WC_Gr1_UV4_log.txt
│       WC_Gr1_UV64.mzlite
│       WC_Gr1_UV64_log.txt
│       WC_Gr2_SBPHA1.mzlite
│       WC_Gr2_SBPHA16.mzlite
│       WC_Gr2_SBPHA16_log.txt
│       WC_Gr2_SBPHA1_log.txt
│       WC_Gr2_SBPHA4.mzlite
│       WC_Gr2_SBPHA4_log.txt
│       WC_Gr2_SBPHA64.mzlite
│       WC_Gr2_SBPHA64_log.txt
│       WC_Gr2_SBPSt1.mzlite
│       WC_Gr2_SBPSt16.mzlite
│       WC_Gr2_SBPSt16_log.txt
│       WC_Gr2_SBPSt1_log.txt
│       WC_Gr2_SBPSt4.mzlite
│       WC_Gr2_SBPSt4_log.txt
│       WC_Gr2_SBPSt64.mzlite
│       WC_Gr2_SBPSt64_log.txt
│       WC_Gr2_SxF1.mzlite
│       WC_Gr2_SxF16.mzlite
│       WC_Gr2_SxF16_log.txt
│       WC_Gr2_SxF1_log.txt
│       WC_Gr2_SxF4.mzlite
│       WC_Gr2_SxF4_log.txt
│       WC_Gr2_SxF64.mzlite
│       WC_Gr2_SxF64_log.txt
│       WC_Gr2_UV1.mzlite
│       WC_Gr2_UV16.mzlite
│       WC_Gr2_UV16_log.txt
│       WC_Gr2_UV1_log.txt
│       WC_Gr2_UV4.mzlite
│       WC_Gr2_UV4_log.txt
│       WC_Gr2_UV64.mzlite
│       WC_Gr2_UV64_log.txt
│       WC_Gr3_FBPSt1.mzlite
│       WC_Gr3_FBPSt16.mzlite
│       WC_Gr3_FBPSt16_log.txt
│       WC_Gr3_FBPSt1_log.txt
│       WC_Gr3_FBPSt4.mzlite
│       WC_Gr3_FBPSt4_log.txt
│       WC_Gr3_FBPSt64.mzlite
│       WC_Gr3_FBPSt64_log.txt
│       WC_Gr3_SBPSt1.mzlite
│       WC_Gr3_SBPSt16.mzlite
│       WC_Gr3_SBPSt16_log.txt
│       WC_Gr3_SBPSt1_log.txt
│       WC_Gr3_SBPSt4.mzlite
│       WC_Gr3_SBPSt4_log.txt
│       WC_Gr3_SBPSt64.mzlite
│       WC_Gr3_SBPSt64_log.txt
│       WC_Gr3_SxF1.mzlite
│       WC_Gr3_SxF16.mzlite
│       WC_Gr3_SxF16_log.txt
│       WC_Gr3_SxF1_log.txt
│       WC_Gr3_SxF4.mzlite
│       WC_Gr3_SxF4_log.txt
│       WC_Gr3_SxF64.mzlite
│       WC_Gr3_SxF64_log.txt
│       WC_Gr3_UV1.mzlite
│       WC_Gr3_UV16.mzlite
│       WC_Gr3_UV16_log.txt
│       WC_Gr3_UV1_log.txt
│       WC_Gr3_UV4.mzlite
│       WC_Gr3_UV4_log.txt
│       WC_Gr3_UV64.mzlite
│       WC_Gr3_UV64_log.txt
│       WC_Gr4_FBPHA1.mzlite
│       WC_Gr4_FBPHA16.mzlite
│       WC_Gr4_FBPHA16_log.txt
│       WC_Gr4_FBPHA1_log.txt
│       WC_Gr4_FBPHA4.mzlite
│       WC_Gr4_FBPHA4_log.txt
│       WC_Gr4_FBPHA64.mzlite
│       WC_Gr4_FBPHA64_log.txt
│       WC_Gr4_FBPSt1.mzlite
│       WC_Gr4_FBPSt16.mzlite
│       WC_Gr4_FBPSt16_log.txt
│       WC_Gr4_FBPSt1_log.txt
│       WC_Gr4_FBPSt4.mzlite
│       WC_Gr4_FBPSt4_log.txt
│       WC_Gr4_FBPSt64.mzlite
│       WC_Gr4_FBPSt64_log.txt
│       WC_Gr4_FxS1.mzlite
│       WC_Gr4_FxS16.mzlite
│       WC_Gr4_FxS16_log.txt
│       WC_Gr4_FxS1_log.txt
│       WC_Gr4_FxS4.mzlite
│       WC_Gr4_FxS4_log.txt
│       WC_Gr4_FxS64.mzlite
│       WC_Gr4_FxS64_log.txt
│       WC_Gr4_UV1.mzlite
│       WC_Gr4_UV16.mzlite
│       WC_Gr4_UV16_log.txt
│       WC_Gr4_UV1_log.txt
│       WC_Gr4_UV4.mzlite
│       WC_Gr4_UV4_log.txt
│       WC_Gr4_UV64.mzlite
│       WC_Gr4_UV64_log.txt
│
├───mzml
│       WC_Gr1_FBPHA1.mzML
│       WC_Gr1_FBPHA16.mzML
│       WC_Gr1_FBPHA4.mzML
│       WC_Gr1_FBPHA64.mzML
│       WC_Gr1_SBPHA1.mzML
│       WC_Gr1_SBPHA16.mzML
│       WC_Gr1_SBPHA4.mzML
│       WC_Gr1_SBPHA64.mzML
│       WC_Gr1_SxF1.mzML
│       WC_Gr1_SxF16.mzML
│       WC_Gr1_SxF4.mzML
│       WC_Gr1_SxF64.mzML
│       WC_Gr1_UV1.mzML
│       WC_Gr1_UV16.mzML
│       WC_Gr1_UV4.mzML
│       WC_Gr1_UV64.mzML
│       WC_Gr2_SBPHA1.mzML
│       WC_Gr2_SBPHA16.mzML
│       WC_Gr2_SBPHA4.mzML
│       WC_Gr2_SBPHA64.mzML
│       WC_Gr2_SBPSt1.mzML
│       WC_Gr2_SBPSt16.mzML
│       WC_Gr2_SBPSt4.mzML
│       WC_Gr2_SBPSt64.mzML
│       WC_Gr2_SxF1.mzML
│       WC_Gr2_SxF16.mzML
│       WC_Gr2_SxF4.mzML
│       WC_Gr2_SxF64.mzML
│       WC_Gr2_UV1.mzML
│       WC_Gr2_UV16.mzML
│       WC_Gr2_UV4.mzML
│       WC_Gr2_UV64.mzML
│       WC_Gr3_FBPSt1.mzML
│       WC_Gr3_FBPSt16.mzML
│       WC_Gr3_FBPSt4.mzML
│       WC_Gr3_FBPSt64.mzML
│       WC_Gr3_SBPSt1.mzML
│       WC_Gr3_SBPSt16.mzML
│       WC_Gr3_SBPSt4.mzML
│       WC_Gr3_SBPSt64.mzML
│       WC_Gr3_SxF1.mzML
│       WC_Gr3_SxF16.mzML
│       WC_Gr3_SxF4.mzML
│       WC_Gr3_SxF64.mzML
│       WC_Gr3_UV1.mzML
│       WC_Gr3_UV16.mzML
│       WC_Gr3_UV4.mzML
│       WC_Gr3_UV64.mzML
│       WC_Gr4_FBPHA1.mzML
│       WC_Gr4_FBPHA16.mzML
│       WC_Gr4_FBPHA4.mzML
│       WC_Gr4_FBPHA64.mzML
│       WC_Gr4_FBPSt1.mzML
│       WC_Gr4_FBPSt16.mzML
│       WC_Gr4_FBPSt4.mzML
│       WC_Gr4_FBPSt64.mzML
│       WC_Gr4_FxS1.mzML
│       WC_Gr4_FxS16.mzML
│       WC_Gr4_FxS4.mzML
│       WC_Gr4_FxS64.mzML
│       WC_Gr4_UV1.mzML
│       WC_Gr4_UV16.mzML
│       WC_Gr4_UV4.mzML
│       WC_Gr4_UV64.mzML
│
├───peptideDB
│       Chlamy.db
│       PeptideDB_Chlamy_log.txt
│       PeptideDB_log.txt
│
├───prot
│       ProteinInference_createClassItemCollection_log.txt
│       ProteinInference_inferProteins_log.txt
│       ProteinInference_log.txt
│       ProteinInference_readAndInferFile_log.txt
│       WC_Gr1_FBPHA1.prot
│       WC_Gr1_FBPHA16.prot
│       WC_Gr1_FBPHA4.prot
│       WC_Gr1_FBPHA64.prot
│       WC_Gr1_SBPHA1.prot
│       WC_Gr1_SBPHA16.prot
│       WC_Gr1_SBPHA4.prot
│       WC_Gr1_SBPHA64.prot
│       WC_Gr1_SxF1.prot
│       WC_Gr1_SxF16.prot
│       WC_Gr1_SxF4.prot
│       WC_Gr1_SxF64.prot
│       WC_Gr1_UV1.prot
│       WC_Gr1_UV16.prot
│       WC_Gr1_UV4.prot
│       WC_Gr1_UV64.prot
│       WC_Gr2_SBPHA1.prot
│       WC_Gr2_SBPHA16.prot
│       WC_Gr2_SBPHA4.prot
│       WC_Gr2_SBPHA64.prot
│       WC_Gr2_SBPSt1.prot
│       WC_Gr2_SBPSt16.prot
│       WC_Gr2_SBPSt4.prot
│       WC_Gr2_SBPSt64.prot
│       WC_Gr2_SxF1.prot
│       WC_Gr2_SxF16.prot
│       WC_Gr2_SxF4.prot
│       WC_Gr2_SxF64.prot
│       WC_Gr2_UV1.prot
│       WC_Gr2_UV16.prot
│       WC_Gr2_UV4.prot
│       WC_Gr2_UV64.prot
│       WC_Gr3_FBPSt1.prot
│       WC_Gr3_FBPSt16.prot
│       WC_Gr3_FBPSt4.prot
│       WC_Gr3_FBPSt64.prot
│       WC_Gr3_SBPSt1.prot
│       WC_Gr3_SBPSt16.prot
│       WC_Gr3_SBPSt4.prot
│       WC_Gr3_SBPSt64.prot
│       WC_Gr3_SxF1.prot
│       WC_Gr3_SxF16.prot
│       WC_Gr3_SxF4.prot
│       WC_Gr3_SxF64.prot
│       WC_Gr3_UV1.prot
│       WC_Gr3_UV16.prot
│       WC_Gr3_UV4.prot
│       WC_Gr3_UV64.prot
│       WC_Gr4_FBPHA1.prot
│       WC_Gr4_FBPHA16.prot
│       WC_Gr4_FBPHA4.prot
│       WC_Gr4_FBPHA64.prot
│       WC_Gr4_FBPSt1.prot
│       WC_Gr4_FBPSt16.prot
│       WC_Gr4_FBPSt4.prot
│       WC_Gr4_FBPSt64.prot
│       WC_Gr4_FxS1.prot
│       WC_Gr4_FxS16.prot
│       WC_Gr4_FxS4.prot
│       WC_Gr4_FxS64.prot
│       WC_Gr4_UV1.prot
│       WC_Gr4_UV16.prot
│       WC_Gr4_UV4.prot
│       WC_Gr4_UV64.prot
│
├───psm
│       PeptideSpectrumMatching_log.txt
│       WC_Gr1_FBPHA1.psm
│       WC_Gr1_FBPHA16.psm
│       WC_Gr1_FBPHA16_log.txt
│       WC_Gr1_FBPHA1_log.txt
│       WC_Gr1_FBPHA4.psm
│       WC_Gr1_FBPHA4_log.txt
│       WC_Gr1_FBPHA64.psm
│       WC_Gr1_FBPHA64_log.txt
│       WC_Gr1_SBPHA1.psm
│       WC_Gr1_SBPHA16.psm
│       WC_Gr1_SBPHA16_log.txt
│       WC_Gr1_SBPHA1_log.txt
│       WC_Gr1_SBPHA4.psm
│       WC_Gr1_SBPHA4_log.txt
│       WC_Gr1_SBPHA64.psm
│       WC_Gr1_SBPHA64_log.txt
│       WC_Gr1_SxF1.psm
│       WC_Gr1_SxF16.psm
│       WC_Gr1_SxF16_log.txt
│       WC_Gr1_SxF1_log.txt
│       WC_Gr1_SxF4.psm
│       WC_Gr1_SxF4_log.txt
│       WC_Gr1_SxF64.psm
│       WC_Gr1_SxF64_log.txt
│       WC_Gr1_UV1.psm
│       WC_Gr1_UV16.psm
│       WC_Gr1_UV16_log.txt
│       WC_Gr1_UV1_log.txt
│       WC_Gr1_UV4.psm
│       WC_Gr1_UV4_log.txt
│       WC_Gr1_UV64.psm
│       WC_Gr1_UV64_log.txt
│       WC_Gr2_SBPHA1.psm
│       WC_Gr2_SBPHA16.psm
│       WC_Gr2_SBPHA16_log.txt
│       WC_Gr2_SBPHA1_log.txt
│       WC_Gr2_SBPHA4.psm
│       WC_Gr2_SBPHA4_log.txt
│       WC_Gr2_SBPHA64.psm
│       WC_Gr2_SBPHA64_log.txt
│       WC_Gr2_SBPSt1.psm
│       WC_Gr2_SBPSt16.psm
│       WC_Gr2_SBPSt16_log.txt
│       WC_Gr2_SBPSt1_log.txt
│       WC_Gr2_SBPSt4.psm
│       WC_Gr2_SBPSt4_log.txt
│       WC_Gr2_SBPSt64.psm
│       WC_Gr2_SBPSt64_log.txt
│       WC_Gr2_SxF1.psm
│       WC_Gr2_SxF16.psm
│       WC_Gr2_SxF16_log.txt
│       WC_Gr2_SxF1_log.txt
│       WC_Gr2_SxF4.psm
│       WC_Gr2_SxF4_log.txt
│       WC_Gr2_SxF64.psm
│       WC_Gr2_SxF64_log.txt
│       WC_Gr2_UV1.psm
│       WC_Gr2_UV16.psm
│       WC_Gr2_UV16_log.txt
│       WC_Gr2_UV1_log.txt
│       WC_Gr2_UV4.psm
│       WC_Gr2_UV4_log.txt
│       WC_Gr2_UV64.psm
│       WC_Gr2_UV64_log.txt
│       WC_Gr3_FBPSt1.psm
│       WC_Gr3_FBPSt16.psm
│       WC_Gr3_FBPSt16_log.txt
│       WC_Gr3_FBPSt1_log.txt
│       WC_Gr3_FBPSt4.psm
│       WC_Gr3_FBPSt4_log.txt
│       WC_Gr3_FBPSt64.psm
│       WC_Gr3_FBPSt64_log.txt
│       WC_Gr3_SBPSt1.psm
│       WC_Gr3_SBPSt16.psm
│       WC_Gr3_SBPSt16_log.txt
│       WC_Gr3_SBPSt1_log.txt
│       WC_Gr3_SBPSt4.psm
│       WC_Gr3_SBPSt4_log.txt
│       WC_Gr3_SBPSt64.psm
│       WC_Gr3_SBPSt64_log.txt
│       WC_Gr3_SxF1.psm
│       WC_Gr3_SxF16.psm
│       WC_Gr3_SxF16_log.txt
│       WC_Gr3_SxF1_log.txt
│       WC_Gr3_SxF4.psm
│       WC_Gr3_SxF4_log.txt
│       WC_Gr3_SxF64.psm
│       WC_Gr3_SxF64_log.txt
│       WC_Gr3_UV1.psm
│       WC_Gr3_UV16.psm
│       WC_Gr3_UV16_log.txt
│       WC_Gr3_UV1_log.txt
│       WC_Gr3_UV4.psm
│       WC_Gr3_UV4_log.txt
│       WC_Gr3_UV64.psm
│       WC_Gr3_UV64_log.txt
│       WC_Gr4_FBPHA1.psm
│       WC_Gr4_FBPHA16.psm
│       WC_Gr4_FBPHA16_log.txt
│       WC_Gr4_FBPHA1_log.txt
│       WC_Gr4_FBPHA4.psm
│       WC_Gr4_FBPHA4_log.txt
│       WC_Gr4_FBPHA64.psm
│       WC_Gr4_FBPHA64_log.txt
│       WC_Gr4_FBPSt1.psm
│       WC_Gr4_FBPSt16.psm
│       WC_Gr4_FBPSt16_log.txt
│       WC_Gr4_FBPSt1_log.txt
│       WC_Gr4_FBPSt4.psm
│       WC_Gr4_FBPSt4_log.txt
│       WC_Gr4_FBPSt64.psm
│       WC_Gr4_FBPSt64_log.txt
│       WC_Gr4_FxS1.psm
│       WC_Gr4_FxS16.psm
│       WC_Gr4_FxS16_log.txt
│       WC_Gr4_FxS1_log.txt
│       WC_Gr4_FxS4.psm
│       WC_Gr4_FxS4_log.txt
│       WC_Gr4_FxS64.psm
│       WC_Gr4_FxS64_log.txt
│       WC_Gr4_UV1.psm
│       WC_Gr4_UV16.psm
│       WC_Gr4_UV16_log.txt
│       WC_Gr4_UV1_log.txt
│       WC_Gr4_UV4.psm
│       WC_Gr4_UV4_log.txt
│       WC_Gr4_UV64.psm
│       WC_Gr4_UV64_log.txt
│
├───psmbasedquantification
│   │   PSMBasedQuantification_log.txt
│   │   WC_Gr1_FBPHA1.quant
│   │   WC_Gr1_FBPHA16.quant
│   │   WC_Gr1_FBPHA16_log.txt
│   │   WC_Gr1_FBPHA1_log.txt
│   │   WC_Gr1_FBPHA4.quant
│   │   WC_Gr1_FBPHA4_log.txt
│   │   WC_Gr1_FBPHA64.quant
│   │   WC_Gr1_FBPHA64_log.txt
│   │   WC_Gr1_SBPHA1.quant
│   │   WC_Gr1_SBPHA16.quant
│   │   WC_Gr1_SBPHA16_log.txt
│   │   WC_Gr1_SBPHA1_log.txt
│   │   WC_Gr1_SBPHA4.quant
│   │   WC_Gr1_SBPHA4_log.txt
│   │   WC_Gr1_SBPHA64.quant
│   │   WC_Gr1_SBPHA64_log.txt
│   │   WC_Gr1_SxF1.quant
│   │   WC_Gr1_SxF16.quant
│   │   WC_Gr1_SxF16_log.txt
│   │   WC_Gr1_SxF1_log.txt
│   │   WC_Gr1_SxF4.quant
│   │   WC_Gr1_SxF4_log.txt
│   │   WC_Gr1_SxF64.quant
│   │   WC_Gr1_SxF64_log.txt
│   │   WC_Gr1_UV1.quant
│   │   WC_Gr1_UV16.quant
│   │   WC_Gr1_UV16_log.txt
│   │   WC_Gr1_UV1_log.txt
│   │   WC_Gr1_UV4.quant
│   │   WC_Gr1_UV4_log.txt
│   │   WC_Gr1_UV64.quant
│   │   WC_Gr1_UV64_log.txt
│   │   WC_Gr2_SBPHA1.quant
│   │   WC_Gr2_SBPHA16.quant
│   │   WC_Gr2_SBPHA16_log.txt
│   │   WC_Gr2_SBPHA1_log.txt
│   │   WC_Gr2_SBPHA4.quant
│   │   WC_Gr2_SBPHA4_log.txt
│   │   WC_Gr2_SBPHA64.quant
│   │   WC_Gr2_SBPHA64_log.txt
│   │   WC_Gr2_SBPSt1.quant
│   │   WC_Gr2_SBPSt16.quant
│   │   WC_Gr2_SBPSt16_log.txt
│   │   WC_Gr2_SBPSt1_log.txt
│   │   WC_Gr2_SBPSt4.quant
│   │   WC_Gr2_SBPSt4_log.txt
│   │   WC_Gr2_SBPSt64.quant
│   │   WC_Gr2_SBPSt64_log.txt
│   │   WC_Gr2_SxF1.quant
│   │   WC_Gr2_SxF16.quant
│   │   WC_Gr2_SxF16_log.txt
│   │   WC_Gr2_SxF1_log.txt
│   │   WC_Gr2_SxF4.quant
│   │   WC_Gr2_SxF4_log.txt
│   │   WC_Gr2_SxF64.quant
│   │   WC_Gr2_SxF64_log.txt
│   │   WC_Gr2_UV1.quant
│   │   WC_Gr2_UV16.quant
│   │   WC_Gr2_UV16_log.txt
│   │   WC_Gr2_UV1_log.txt
│   │   WC_Gr2_UV4.quant
│   │   WC_Gr2_UV4_log.txt
│   │   WC_Gr2_UV64.quant
│   │   WC_Gr2_UV64_log.txt
│   │   WC_Gr3_FBPSt1.quant
│   │   WC_Gr3_FBPSt16.quant
│   │   WC_Gr3_FBPSt16_log.txt
│   │   WC_Gr3_FBPSt1_log.txt
│   │   WC_Gr3_FBPSt4.quant
│   │   WC_Gr3_FBPSt4_log.txt
│   │   WC_Gr3_FBPSt64.quant
│   │   WC_Gr3_FBPSt64_log.txt
│   │   WC_Gr3_SBPSt1.quant
│   │   WC_Gr3_SBPSt16.quant
│   │   WC_Gr3_SBPSt16_log.txt
│   │   WC_Gr3_SBPSt1_log.txt
│   │   WC_Gr3_SBPSt4.quant
│   │   WC_Gr3_SBPSt4_log.txt
│   │   WC_Gr3_SBPSt64.quant
│   │   WC_Gr3_SBPSt64_log.txt
│   │   WC_Gr3_SxF1.quant
│   │   WC_Gr3_SxF16.quant
│   │   WC_Gr3_SxF16_log.txt
│   │   WC_Gr3_SxF1_log.txt
│   │   WC_Gr3_SxF4.quant
│   │   WC_Gr3_SxF4_log.txt
│   │   WC_Gr3_SxF64.quant
│   │   WC_Gr3_SxF64_log.txt
│   │   WC_Gr3_UV1.quant
│   │   WC_Gr3_UV16.quant
│   │   WC_Gr3_UV16_log.txt
│   │   WC_Gr3_UV1_log.txt
│   │   WC_Gr3_UV4.quant
│   │   WC_Gr3_UV4_log.txt
│   │   WC_Gr3_UV64.quant
│   │   WC_Gr3_UV64_log.txt
│   │   WC_Gr4_FBPHA1.quant
│   │   WC_Gr4_FBPHA16.quant
│   │   WC_Gr4_FBPHA16_log.txt
│   │   WC_Gr4_FBPHA1_log.txt
│   │   WC_Gr4_FBPHA4.quant
│   │   WC_Gr4_FBPHA4_log.txt
│   │   WC_Gr4_FBPHA64.quant
│   │   WC_Gr4_FBPHA64_log.txt
│   │   WC_Gr4_FBPSt1.quant
│   │   WC_Gr4_FBPSt16.quant
│   │   WC_Gr4_FBPSt16_log.txt
│   │   WC_Gr4_FBPSt1_log.txt
│   │   WC_Gr4_FBPSt4.quant
│   │   WC_Gr4_FBPSt4_log.txt
│   │   WC_Gr4_FBPSt64.quant
│   │   WC_Gr4_FBPSt64_log.txt
│   │   WC_Gr4_FxS1.quant
│   │   WC_Gr4_FxS16.quant
│   │   WC_Gr4_FxS16_log.txt
│   │   WC_Gr4_FxS1_log.txt
│   │   WC_Gr4_FxS4.quant
│   │   WC_Gr4_FxS4_log.txt
│   │   WC_Gr4_FxS64.quant
│   │   WC_Gr4_FxS64_log.txt
│   │   WC_Gr4_UV1.quant
│   │   WC_Gr4_UV16.quant
│   │   WC_Gr4_UV16_log.txt
│   │   WC_Gr4_UV1_log.txt
│   │   WC_Gr4_UV4.quant
│   │   WC_Gr4_UV4_log.txt
│   │   WC_Gr4_UV64.quant
│   │   WC_Gr4_UV64_log.txt
│   │
│   ├───WC_Gr4_FBPHA16_plots
│   ├───WC_Gr4_FBPHA1_plots
│   ├───WC_Gr4_FBPHA4_plots
│   ├───WC_Gr4_FBPHA64_plots
│   ├───WC_Gr4_FBPSt16_plots
│   ├───WC_Gr4_FBPSt1_plots
│   ├───WC_Gr4_FBPSt4_plots
│   ├───WC_Gr4_FBPSt64_plots
│   ├───WC_Gr4_FxS16_plots
│   ├───WC_Gr4_FxS1_plots
│   ├───WC_Gr4_FxS4_plots
│   ├───WC_Gr4_FxS64_plots
│   ├───WC_Gr4_UV16_plots
│   ├───WC_Gr4_UV1_plots
│   ├───WC_Gr4_UV4_plots
│   └───WC_Gr4_UV64_plots
├───psmstats
│   │   PSMStatistics_log.txt
│   │   WC_Gr1_FBPHA1.qpsm
│   │   WC_Gr1_FBPHA16.qpsm
│   │   WC_Gr1_FBPHA16_log.txt
│   │   WC_Gr1_FBPHA1_log.txt
│   │   WC_Gr1_FBPHA4.qpsm
│   │   WC_Gr1_FBPHA4_log.txt
│   │   WC_Gr1_FBPHA64.qpsm
│   │   WC_Gr1_FBPHA64_log.txt
│   │   WC_Gr1_SBPHA1.qpsm
│   │   WC_Gr1_SBPHA16.qpsm
│   │   WC_Gr1_SBPHA16_log.txt
│   │   WC_Gr1_SBPHA1_log.txt
│   │   WC_Gr1_SBPHA4.qpsm
│   │   WC_Gr1_SBPHA4_log.txt
│   │   WC_Gr1_SBPHA64.qpsm
│   │   WC_Gr1_SBPHA64_log.txt
│   │   WC_Gr1_SxF1.qpsm
│   │   WC_Gr1_SxF16.qpsm
│   │   WC_Gr1_SxF16_log.txt
│   │   WC_Gr1_SxF1_log.txt
│   │   WC_Gr1_SxF4.qpsm
│   │   WC_Gr1_SxF4_log.txt
│   │   WC_Gr1_SxF64.qpsm
│   │   WC_Gr1_SxF64_log.txt
│   │   WC_Gr1_UV1.qpsm
│   │   WC_Gr1_UV16.qpsm
│   │   WC_Gr1_UV16_log.txt
│   │   WC_Gr1_UV1_log.txt
│   │   WC_Gr1_UV4.qpsm
│   │   WC_Gr1_UV4_log.txt
│   │   WC_Gr1_UV64.qpsm
│   │   WC_Gr1_UV64_log.txt
│   │   WC_Gr2_SBPHA1.qpsm
│   │   WC_Gr2_SBPHA16.qpsm
│   │   WC_Gr2_SBPHA16_log.txt
│   │   WC_Gr2_SBPHA1_log.txt
│   │   WC_Gr2_SBPHA4.qpsm
│   │   WC_Gr2_SBPHA4_log.txt
│   │   WC_Gr2_SBPHA64.qpsm
│   │   WC_Gr2_SBPHA64_log.txt
│   │   WC_Gr2_SBPSt1.qpsm
│   │   WC_Gr2_SBPSt16.qpsm
│   │   WC_Gr2_SBPSt16_log.txt
│   │   WC_Gr2_SBPSt1_log.txt
│   │   WC_Gr2_SBPSt4.qpsm
│   │   WC_Gr2_SBPSt4_log.txt
│   │   WC_Gr2_SBPSt64.qpsm
│   │   WC_Gr2_SBPSt64_log.txt
│   │   WC_Gr2_SxF1.qpsm
│   │   WC_Gr2_SxF16.qpsm
│   │   WC_Gr2_SxF16_log.txt
│   │   WC_Gr2_SxF1_log.txt
│   │   WC_Gr2_SxF4.qpsm
│   │   WC_Gr2_SxF4_log.txt
│   │   WC_Gr2_SxF64.qpsm
│   │   WC_Gr2_SxF64_log.txt
│   │   WC_Gr2_UV1.qpsm
│   │   WC_Gr2_UV16.qpsm
│   │   WC_Gr2_UV16_log.txt
│   │   WC_Gr2_UV1_log.txt
│   │   WC_Gr2_UV4.qpsm
│   │   WC_Gr2_UV4_log.txt
│   │   WC_Gr2_UV64.qpsm
│   │   WC_Gr2_UV64_log.txt
│   │   WC_Gr3_FBPSt1.qpsm
│   │   WC_Gr3_FBPSt16.qpsm
│   │   WC_Gr3_FBPSt16_log.txt
│   │   WC_Gr3_FBPSt1_log.txt
│   │   WC_Gr3_FBPSt4.qpsm
│   │   WC_Gr3_FBPSt4_log.txt
│   │   WC_Gr3_FBPSt64.qpsm
│   │   WC_Gr3_FBPSt64_log.txt
│   │   WC_Gr3_SBPSt1.qpsm
│   │   WC_Gr3_SBPSt16.qpsm
│   │   WC_Gr3_SBPSt16_log.txt
│   │   WC_Gr3_SBPSt1_log.txt
│   │   WC_Gr3_SBPSt4.qpsm
│   │   WC_Gr3_SBPSt4_log.txt
│   │   WC_Gr3_SBPSt64.qpsm
│   │   WC_Gr3_SBPSt64_log.txt
│   │   WC_Gr3_SxF1.qpsm
│   │   WC_Gr3_SxF16.qpsm
│   │   WC_Gr3_SxF16_log.txt
│   │   WC_Gr3_SxF1_log.txt
│   │   WC_Gr3_SxF4.qpsm
│   │   WC_Gr3_SxF4_log.txt
│   │   WC_Gr3_SxF64.qpsm
│   │   WC_Gr3_SxF64_log.txt
│   │   WC_Gr3_UV1.qpsm
│   │   WC_Gr3_UV16.qpsm
│   │   WC_Gr3_UV16_log.txt
│   │   WC_Gr3_UV1_log.txt
│   │   WC_Gr3_UV4.qpsm
│   │   WC_Gr3_UV4_log.txt
│   │   WC_Gr3_UV64.qpsm
│   │   WC_Gr3_UV64_log.txt
│   │   WC_Gr4_FBPHA1.qpsm
│   │   WC_Gr4_FBPHA16.qpsm
│   │   WC_Gr4_FBPHA16_log.txt
│   │   WC_Gr4_FBPHA1_log.txt
│   │   WC_Gr4_FBPHA4.qpsm
│   │   WC_Gr4_FBPHA4_log.txt
│   │   WC_Gr4_FBPHA64.qpsm
│   │   WC_Gr4_FBPHA64_log.txt
│   │   WC_Gr4_FBPSt1.qpsm
│   │   WC_Gr4_FBPSt16.qpsm
│   │   WC_Gr4_FBPSt16_log.txt
│   │   WC_Gr4_FBPSt1_log.txt
│   │   WC_Gr4_FBPSt4.qpsm
│   │   WC_Gr4_FBPSt4_log.txt
│   │   WC_Gr4_FBPSt64.qpsm
│   │   WC_Gr4_FBPSt64_log.txt
│   │   WC_Gr4_FxS1.qpsm
│   │   WC_Gr4_FxS16.qpsm
│   │   WC_Gr4_FxS16_log.txt
│   │   WC_Gr4_FxS1_log.txt
│   │   WC_Gr4_FxS4.qpsm
│   │   WC_Gr4_FxS4_log.txt
│   │   WC_Gr4_FxS64.qpsm
│   │   WC_Gr4_FxS64_log.txt
│   │   WC_Gr4_UV1.qpsm
│   │   WC_Gr4_UV16.qpsm
│   │   WC_Gr4_UV16_log.txt
│   │   WC_Gr4_UV1_log.txt
│   │   WC_Gr4_UV4.qpsm
│   │   WC_Gr4_UV4_log.txt
│   │   WC_Gr4_UV64.qpsm
│   │   WC_Gr4_UV64_log.txt
│   │
│   ├───WC_Gr4_FBPHA16_plots
│   ├───WC_Gr4_FBPHA1_plots
│   ├───WC_Gr4_FBPHA4_plots
│   ├───WC_Gr4_FBPHA64_plots
│   ├───WC_Gr4_FBPSt16_plots
│   ├───WC_Gr4_FBPSt1_plots
│   ├───WC_Gr4_FBPSt4_plots
│   ├───WC_Gr4_FBPSt64_plots
│   ├───WC_Gr4_FxS16_plots
│   ├───WC_Gr4_FxS1_plots
│   ├───WC_Gr4_FxS4_plots
│   ├───WC_Gr4_FxS64_plots
│   ├───WC_Gr4_UV16_plots
│   ├───WC_Gr4_UV1_plots
│   ├───WC_Gr4_UV4_plots
│   └───WC_Gr4_UV64_plots
├───quantandprot
│       JoinQuantPepIonsWithProteins_log.txt
│       WC_Gr1_FBPHA1.quantAndProt
│       WC_Gr1_FBPHA16.quantAndProt
│       WC_Gr1_FBPHA4.quantAndProt
│       WC_Gr1_FBPHA64.quantAndProt
│       WC_Gr1_SBPHA1.quantAndProt
│       WC_Gr1_SBPHA16.quantAndProt
│       WC_Gr1_SBPHA4.quantAndProt
│       WC_Gr1_SBPHA64.quantAndProt
│       WC_Gr1_SxF1.quantAndProt
│       WC_Gr1_SxF16.quantAndProt
│       WC_Gr1_SxF4.quantAndProt
│       WC_Gr1_SxF64.quantAndProt
│       WC_Gr1_UV1.quantAndProt
│       WC_Gr1_UV16.quantAndProt
│       WC_Gr1_UV4.quantAndProt
│       WC_Gr1_UV64.quantAndProt
│       WC_Gr2_SBPHA1.quantAndProt
│       WC_Gr2_SBPHA16.quantAndProt
│       WC_Gr2_SBPHA4.quantAndProt
│       WC_Gr2_SBPHA64.quantAndProt
│       WC_Gr2_SBPSt1.quantAndProt
│       WC_Gr2_SBPSt16.quantAndProt
│       WC_Gr2_SBPSt4.quantAndProt
│       WC_Gr2_SBPSt64.quantAndProt
│       WC_Gr2_SxF1.quantAndProt
│       WC_Gr2_SxF16.quantAndProt
│       WC_Gr2_SxF4.quantAndProt
│       WC_Gr2_SxF64.quantAndProt
│       WC_Gr2_UV1.quantAndProt
│       WC_Gr2_UV16.quantAndProt
│       WC_Gr2_UV4.quantAndProt
│       WC_Gr2_UV64.quantAndProt
│       WC_Gr3_FBPSt1.quantAndProt
│       WC_Gr3_FBPSt16.quantAndProt
│       WC_Gr3_FBPSt4.quantAndProt
│       WC_Gr3_FBPSt64.quantAndProt
│       WC_Gr3_SBPSt1.quantAndProt
│       WC_Gr3_SBPSt16.quantAndProt
│       WC_Gr3_SBPSt4.quantAndProt
│       WC_Gr3_SBPSt64.quantAndProt
│       WC_Gr3_SxF1.quantAndProt
│       WC_Gr3_SxF16.quantAndProt
│       WC_Gr3_SxF4.quantAndProt
│       WC_Gr3_SxF64.quantAndProt
│       WC_Gr3_UV1.quantAndProt
│       WC_Gr3_UV16.quantAndProt
│       WC_Gr3_UV4.quantAndProt
│       WC_Gr3_UV64.quantAndProt
│       WC_Gr4_FBPHA1.quantAndProt
│       WC_Gr4_FBPHA16.quantAndProt
│       WC_Gr4_FBPHA4.quantAndProt
│       WC_Gr4_FBPHA64.quantAndProt
│       WC_Gr4_FBPSt1.quantAndProt
│       WC_Gr4_FBPSt16.quantAndProt
│       WC_Gr4_FBPSt4.quantAndProt
│       WC_Gr4_FBPSt64.quantAndProt
│       WC_Gr4_FxS1.quantAndProt
│       WC_Gr4_FxS16.quantAndProt
│       WC_Gr4_FxS4.quantAndProt
│       WC_Gr4_FxS64.quantAndProt
│       WC_Gr4_UV1.quantAndProt
│       WC_Gr4_UV16.quantAndProt
│       WC_Gr4_UV4.quantAndProt
│       WC_Gr4_UV64.quantAndProt
│
└───workflow
    ├───JoinQuantPepIonsWithProteins
    │   └───net5.0
    │       │   Argu.dll
    │       │   BioFSharp.dll
    │       │   BioFSharp.IO.dll
    │       │   BioFSharp.Mz.dll
    │       │   Deedle.dll
    │       │   DynamicObj.dll
    │       │   FSharp.Core.dll
    │       │   FSharp.Stats.dll
    │       │   FSharpAux.dll
    │       │   FSharpAux.IO.dll
    │       │   MzIO.dll
    │       │   MzIO.MzML.dll
    │       │   MzIO.Processing.dll
    │       │   MzIO.SQL.dll
    │       │   Newtonsoft.Json.dll
    │       │   NLog.dll
    │       │   Plotly.NET.dll
    │       │   ProteomIQon.dll
    │       │   ProteomIQon.JoinQuantPepIonsWithProteins.deps.json
    │       │   ProteomIQon.JoinQuantPepIonsWithProteins.dll
    │       │   ProteomIQon.JoinQuantPepIonsWithProteins.exe
    │       │   ProteomIQon.JoinQuantPepIonsWithProteins.pdb
    │       │   ProteomIQon.JoinQuantPepIonsWithProteins.runtimeconfig.dev.json
    │       │   ProteomIQon.JoinQuantPepIonsWithProteins.runtimeconfig.json
    │       │   ProteomIQon.JoinQuantPepIonsWithProteins.xml
    │       │   ProteomIQon.pdb
    │       │   ProteomIQon.xml
    │       │   System.Configuration.ConfigurationManager.dll
    │       │   System.Data.SQLite.dll
    │       │   System.Security.Cryptography.ProtectedData.dll
    │       │
    │       ├───cs
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───de
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───es
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───fr
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───it
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───ja
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───ko
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───pl
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───pt-BR
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───ru
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───runtimes
    │       │   ├───linux-x64
    │       │   │   └───native
    │       │   │           SQLite.Interop.dll
    │       │   │
    │       │   ├───osx-x64
    │       │   │   └───native
    │       │   │           SQLite.Interop.dll
    │       │   │
    │       │   ├───win
    │       │   │   └───lib
    │       │   │       └───netstandard2.0
    │       │   │               System.Security.Cryptography.ProtectedData.dll
    │       │   │
    │       │   ├───win-x64
    │       │   │   └───native
    │       │   │           SQLite.Interop.dll
    │       │   │
    │       │   └───win-x86
    │       │       └───native
    │       │               SQLite.Interop.dll
    │       │
    │       ├───tr
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───zh-Hans
    │       │       FSharp.Core.resources.dll
    │       │
    │       └───zh-Hant
    │               FSharp.Core.resources.dll
    │
    ├───LabeledProteinQuantification
    │   └───net5.0
    │       │   Argu.dll
    │       │   BioFSharp.dll
    │       │   BioFSharp.IO.dll
    │       │   BioFSharp.Mz.dll
    │       │   Deedle.dll
    │       │   DynamicObj.dll
    │       │   FSharp.Core.dll
    │       │   FSharp.Stats.dll
    │       │   FSharpAux.dll
    │       │   FSharpAux.IO.dll
    │       │   MzIO.dll
    │       │   MzIO.MzML.dll
    │       │   MzIO.Processing.dll
    │       │   MzIO.SQL.dll
    │       │   Newtonsoft.Json.dll
    │       │   NLog.dll
    │       │   Plotly.NET.dll
    │       │   ProteomIQon.dll
    │       │   ProteomIQon.LabeledProteinQuantification.deps.json
    │       │   ProteomIQon.LabeledProteinQuantification.dll
    │       │   ProteomIQon.LabeledProteinQuantification.exe
    │       │   ProteomIQon.LabeledProteinQuantification.pdb
    │       │   ProteomIQon.LabeledProteinQuantification.runtimeconfig.dev.json
    │       │   ProteomIQon.LabeledProteinQuantification.runtimeconfig.json
    │       │   ProteomIQon.LabeledProteinQuantification.xml
    │       │   ProteomIQon.pdb
    │       │   ProteomIQon.xml
    │       │   System.Configuration.ConfigurationManager.dll
    │       │   System.Data.SQLite.dll
    │       │   System.Security.Cryptography.ProtectedData.dll
    │       │
    │       ├───cs
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───de
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───es
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───fr
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───it
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───ja
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───ko
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───pl
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───pt-BR
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───ru
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───runtimes
    │       │   ├───linux-x64
    │       │   │   └───native
    │       │   │           SQLite.Interop.dll
    │       │   │
    │       │   ├───osx-x64
    │       │   │   └───native
    │       │   │           SQLite.Interop.dll
    │       │   │
    │       │   ├───win
    │       │   │   └───lib
    │       │   │       └───netstandard2.0
    │       │   │               System.Security.Cryptography.ProtectedData.dll
    │       │   │
    │       │   ├───win-x64
    │       │   │   └───native
    │       │   │           SQLite.Interop.dll
    │       │   │
    │       │   └───win-x86
    │       │       └───native
    │       │               SQLite.Interop.dll
    │       │
    │       ├───tr
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───zh-Hans
    │       │       FSharp.Core.resources.dll
    │       │
    │       └───zh-Hant
    │               FSharp.Core.resources.dll
    │
    ├───MzMLToMzLite
    │   │   AssemblyInfo.fs
    │   │   CLIArgumentParsing.fs
    │   │   MzMLToMzLite.fs
    │   │   MzMLToMzLite.fsproj
    │   │   Program.fs
    │   │   RELEASE_NOTES.md
    │   │
    │   ├───bin
    │   │   └───Release
    │   │       └───net5.0
    │   │           │   Argu.dll
    │   │           │   BioFSharp.dll
    │   │           │   BioFSharp.IO.dll
    │   │           │   BioFSharp.Mz.dll
    │   │           │   Deedle.dll
    │   │           │   DynamicObj.dll
    │   │           │   FSharp.Core.dll
    │   │           │   FSharp.Stats.dll
    │   │           │   FSharpAux.dll
    │   │           │   FSharpAux.IO.dll
    │   │           │   MzIO.dll
    │   │           │   MzIO.MzML.dll
    │   │           │   MzIO.Processing.dll
    │   │           │   MzIO.SQL.dll
    │   │           │   Newtonsoft.Json.dll
    │   │           │   NLog.dll
    │   │           │   Plotly.NET.dll
    │   │           │   ProteomIQon.dll
    │   │           │   ProteomIQon.MzMLToMzLite.deps.json
    │   │           │   ProteomIQon.MzMLToMzLite.dll
    │   │           │   ProteomIQon.MzMLToMzLite.exe
    │   │           │   ProteomIQon.MzMLToMzLite.pdb
    │   │           │   ProteomIQon.MzMLToMzLite.runtimeconfig.dev.json
    │   │           │   ProteomIQon.MzMLToMzLite.runtimeconfig.json
    │   │           │   ProteomIQon.MzMLToMzLite.xml
    │   │           │   ProteomIQon.pdb
    │   │           │   ProteomIQon.xml
    │   │           │   System.Configuration.ConfigurationManager.dll
    │   │           │   System.Data.SQLite.dll
    │   │           │   System.Security.Cryptography.ProtectedData.dll
    │   │           │
    │   │           ├───cs
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───de
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───es
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───fr
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───it
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───ja
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───ko
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───pl
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───pt-BR
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───ru
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───runtimes
    │   │           │   ├───linux-x64
    │   │           │   │   └───native
    │   │           │   │           SQLite.Interop.dll
    │   │           │   │
    │   │           │   ├───osx-x64
    │   │           │   │   └───native
    │   │           │   │           SQLite.Interop.dll
    │   │           │   │
    │   │           │   ├───win
    │   │           │   │   └───lib
    │   │           │   │       └───netstandard2.0
    │   │           │   │               System.Security.Cryptography.ProtectedData.dll
    │   │           │   │
    │   │           │   ├───win-x64
    │   │           │   │   └───native
    │   │           │   │           SQLite.Interop.dll
    │   │           │   │
    │   │           │   └───win-x86
    │   │           │       └───native
    │   │           │               SQLite.Interop.dll
    │   │           │
    │   │           ├───tr
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───zh-Hans
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           └───zh-Hant
    │   │                   FSharp.Core.resources.dll
    │   │
    │   └───obj
    │       │   MzMLToMzLite.fsproj.nuget.dgspec.json
    │       │   MzMLToMzLite.fsproj.nuget.g.props
    │       │   MzMLToMzLite.fsproj.nuget.g.targets
    │       │   project.assets.json
    │       │   project.nuget.cache
    │       │
    │       └───Release
    │           └───net5.0
    │                   .NETCoreApp,Version=v5.0.AssemblyAttributes.fs
    │                   apphost.exe
    │                   MzMLToMzLite.assets.cache
    │                   MzMLToMzLite.fsproj.AssemblyReference.cache
    │                   MzMLToMzLite.fsproj.CopyComplete
    │                   MzMLToMzLite.fsproj.FileListAbsolute.txt
    │                   MzMLToMzLite.genruntimeconfig.cache
    │                   ProteomIQon.MzMLToMzLite.dll
    │                   ProteomIQon.MzMLToMzLite.pdb
    │                   ProteomIQon.MzMLToMzLite.xml
    │
    ├───PeptideDB
    │   │   AssemblyInfo.fs
    │   │   CLIArgumentParsing.fs
    │   │   paket.references
    │   │   PeptideDB.fs
    │   │   PeptideDB.fsproj
    │   │   Program.fs
    │   │   RELEASE_NOTES.md
    │   │
    │   ├───bin
    │   │   └───Release
    │   │       └───net5.0
    │   │           │   Argu.dll
    │   │           │   BioFSharp.dll
    │   │           │   BioFSharp.IO.dll
    │   │           │   BioFSharp.Mz.dll
    │   │           │   Deedle.dll
    │   │           │   DynamicObj.dll
    │   │           │   FSharp.Core.dll
    │   │           │   FSharp.Stats.dll
    │   │           │   FSharpAux.dll
    │   │           │   FSharpAux.IO.dll
    │   │           │   MzIO.dll
    │   │           │   MzIO.MzML.dll
    │   │           │   MzIO.Processing.dll
    │   │           │   MzIO.SQL.dll
    │   │           │   Newtonsoft.Json.dll
    │   │           │   NLog.dll
    │   │           │   Plotly.NET.dll
    │   │           │   ProteomIQon.dll
    │   │           │   ProteomIQon.pdb
    │   │           │   ProteomIQon.PeptideDB.deps.json
    │   │           │   ProteomIQon.PeptideDB.dll
    │   │           │   ProteomIQon.PeptideDB.exe
    │   │           │   ProteomIQon.PeptideDB.pdb
    │   │           │   ProteomIQon.PeptideDB.runtimeconfig.dev.json
    │   │           │   ProteomIQon.PeptideDB.runtimeconfig.json
    │   │           │   ProteomIQon.PeptideDB.xml
    │   │           │   ProteomIQon.xml
    │   │           │   System.Configuration.ConfigurationManager.dll
    │   │           │   System.Data.SQLite.dll
    │   │           │   System.Security.Cryptography.ProtectedData.dll
    │   │           │
    │   │           ├───cs
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───de
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───es
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───fr
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───it
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───ja
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───ko
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───pl
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───pt-BR
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───ru
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───runtimes
    │   │           │   ├───linux-x64
    │   │           │   │   └───native
    │   │           │   │           SQLite.Interop.dll
    │   │           │   │
    │   │           │   ├───osx-x64
    │   │           │   │   └───native
    │   │           │   │           SQLite.Interop.dll
    │   │           │   │
    │   │           │   ├───win
    │   │           │   │   └───lib
    │   │           │   │       └───netstandard2.0
    │   │           │   │               System.Security.Cryptography.ProtectedData.dll
    │   │           │   │
    │   │           │   ├───win-x64
    │   │           │   │   └───native
    │   │           │   │           SQLite.Interop.dll
    │   │           │   │
    │   │           │   └───win-x86
    │   │           │       └───native
    │   │           │               SQLite.Interop.dll
    │   │           │
    │   │           ├───tr
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───zh-Hans
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           └───zh-Hant
    │   │                   FSharp.Core.resources.dll
    │   │
    │   └───obj
    │       │   PeptideDB.fsproj.nuget.dgspec.json
    │       │   PeptideDB.fsproj.nuget.g.props
    │       │   PeptideDB.fsproj.nuget.g.targets
    │       │   project.assets.json
    │       │   project.nuget.cache
    │       │
    │       └───Release
    │           └───net5.0
    │                   .NETCoreApp,Version=v5.0.AssemblyAttributes.fs
    │                   apphost.exe
    │                   PeptideDB.assets.cache
    │                   PeptideDB.fsproj.AssemblyReference.cache
    │                   PeptideDB.fsproj.CopyComplete
    │                   PeptideDB.fsproj.FileListAbsolute.txt
    │                   PeptideDB.genruntimeconfig.cache
    │                   ProteomIQon.PeptideDB.dll
    │                   ProteomIQon.PeptideDB.pdb
    │                   ProteomIQon.PeptideDB.xml
    │
    ├───PeptideSpectrumMatching
    │   │   AssemblyInfo.fs
    │   │   CLIArgumentParsing.fs
    │   │   PeptideSpectrumMatching.fs
    │   │   PeptideSpectrumMatching.fsproj
    │   │   Program.fs
    │   │   RELEASE_NOTES.md
    │   │
    │   ├───bin
    │   │   └───Release
    │   │       └───net5.0
    │   │           │   Argu.dll
    │   │           │   BioFSharp.dll
    │   │           │   BioFSharp.IO.dll
    │   │           │   BioFSharp.Mz.dll
    │   │           │   Deedle.dll
    │   │           │   DynamicObj.dll
    │   │           │   FSharp.Core.dll
    │   │           │   FSharp.Stats.dll
    │   │           │   FSharpAux.dll
    │   │           │   FSharpAux.IO.dll
    │   │           │   MzIO.dll
    │   │           │   MzIO.MzML.dll
    │   │           │   MzIO.Processing.dll
    │   │           │   MzIO.SQL.dll
    │   │           │   Newtonsoft.Json.dll
    │   │           │   NLog.dll
    │   │           │   Plotly.NET.dll
    │   │           │   ProteomIQon.dll
    │   │           │   ProteomIQon.pdb
    │   │           │   ProteomIQon.PeptideSpectrumMatching.deps.json
    │   │           │   ProteomIQon.PeptideSpectrumMatching.dll
    │   │           │   ProteomIQon.PeptideSpectrumMatching.exe
    │   │           │   ProteomIQon.PeptideSpectrumMatching.pdb
    │   │           │   ProteomIQon.PeptideSpectrumMatching.runtimeconfig.dev.json
    │   │           │   ProteomIQon.PeptideSpectrumMatching.runtimeconfig.json
    │   │           │   ProteomIQon.PeptideSpectrumMatching.xml
    │   │           │   ProteomIQon.xml
    │   │           │   System.Configuration.ConfigurationManager.dll
    │   │           │   System.Data.SQLite.dll
    │   │           │   System.Security.Cryptography.ProtectedData.dll
    │   │           │
    │   │           ├───cs
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───de
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───es
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───fr
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───it
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───ja
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───ko
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───pl
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───pt-BR
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───ru
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───runtimes
    │   │           │   ├───linux-x64
    │   │           │   │   └───native
    │   │           │   │           SQLite.Interop.dll
    │   │           │   │
    │   │           │   ├───osx-x64
    │   │           │   │   └───native
    │   │           │   │           SQLite.Interop.dll
    │   │           │   │
    │   │           │   ├───win
    │   │           │   │   └───lib
    │   │           │   │       └───netstandard2.0
    │   │           │   │               System.Security.Cryptography.ProtectedData.dll
    │   │           │   │
    │   │           │   ├───win-x64
    │   │           │   │   └───native
    │   │           │   │           SQLite.Interop.dll
    │   │           │   │
    │   │           │   └───win-x86
    │   │           │       └───native
    │   │           │               SQLite.Interop.dll
    │   │           │
    │   │           ├───tr
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           ├───zh-Hans
    │   │           │       FSharp.Core.resources.dll
    │   │           │
    │   │           └───zh-Hant
    │   │                   FSharp.Core.resources.dll
    │   │
    │   └───obj
    │       │   PeptideSpectrumMatching.fsproj.nuget.dgspec.json
    │       │   PeptideSpectrumMatching.fsproj.nuget.g.props
    │       │   PeptideSpectrumMatching.fsproj.nuget.g.targets
    │       │   project.assets.json
    │       │   project.nuget.cache
    │       │
    │       └───Release
    │           └───net5.0
    │                   .NETCoreApp,Version=v5.0.AssemblyAttributes.fs
    │                   apphost.exe
    │                   PeptideSpectrumMatching.assets.cache
    │                   PeptideSpectrumMatching.fsproj.AssemblyReference.cache
    │                   PeptideSpectrumMatching.fsproj.CopyComplete
    │                   PeptideSpectrumMatching.fsproj.FileListAbsolute.txt
    │                   PeptideSpectrumMatching.genruntimeconfig.cache
    │                   ProteomIQon.PeptideSpectrumMatching.dll
    │                   ProteomIQon.PeptideSpectrumMatching.pdb
    │                   ProteomIQon.PeptideSpectrumMatching.xml
    │
    ├───ProteinInference
    │   └───net5.0
    │       │   Argu.dll
    │       │   BioFSharp.dll
    │       │   BioFSharp.IO.dll
    │       │   BioFSharp.Mz.dll
    │       │   Deedle.dll
    │       │   DynamicObj.dll
    │       │   FSharp.Core.dll
    │       │   FSharp.Stats.dll
    │       │   FSharpAux.dll
    │       │   FSharpAux.IO.dll
    │       │   MzIO.dll
    │       │   MzIO.MzML.dll
    │       │   MzIO.Processing.dll
    │       │   MzIO.SQL.dll
    │       │   Newtonsoft.Json.dll
    │       │   NLog.dll
    │       │   Plotly.NET.dll
    │       │   ProteomIQon.dll
    │       │   ProteomIQon.pdb
    │       │   ProteomIQon.ProteinInference.deps.json
    │       │   ProteomIQon.ProteinInference.dll
    │       │   ProteomIQon.ProteinInference.exe
    │       │   ProteomIQon.ProteinInference.pdb
    │       │   ProteomIQon.ProteinInference.runtimeconfig.dev.json
    │       │   ProteomIQon.ProteinInference.runtimeconfig.json
    │       │   ProteomIQon.ProteinInference.xml
    │       │   ProteomIQon.xml
    │       │   System.Configuration.ConfigurationManager.dll
    │       │   System.Data.SQLite.dll
    │       │   System.Security.Cryptography.ProtectedData.dll
    │       │
    │       ├───cs
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───de
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───es
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───fr
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───it
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───ja
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───ko
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───pl
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───pt-BR
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───ru
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───runtimes
    │       │   ├───linux-x64
    │       │   │   └───native
    │       │   │           SQLite.Interop.dll
    │       │   │
    │       │   ├───osx-x64
    │       │   │   └───native
    │       │   │           SQLite.Interop.dll
    │       │   │
    │       │   ├───win
    │       │   │   └───lib
    │       │   │       └───netstandard2.0
    │       │   │               System.Security.Cryptography.ProtectedData.dll
    │       │   │
    │       │   ├───win-x64
    │       │   │   └───native
    │       │   │           SQLite.Interop.dll
    │       │   │
    │       │   └───win-x86
    │       │       └───native
    │       │               SQLite.Interop.dll
    │       │
    │       ├───tr
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───zh-Hans
    │       │       FSharp.Core.resources.dll
    │       │
    │       └───zh-Hant
    │               FSharp.Core.resources.dll
    │
    ├───PSMBasedQuantification
    │   └───net5.0
    │       │   Argu.dll
    │       │   BioFSharp.dll
    │       │   BioFSharp.IO.dll
    │       │   BioFSharp.Mz.dll
    │       │   Deedle.dll
    │       │   DynamicObj.dll
    │       │   FSharp.Core.dll
    │       │   FSharp.Stats.dll
    │       │   FSharpAux.dll
    │       │   FSharpAux.IO.dll
    │       │   MzIO.dll
    │       │   MzIO.MzML.dll
    │       │   MzIO.Processing.dll
    │       │   MzIO.SQL.dll
    │       │   Newtonsoft.Json.dll
    │       │   NLog.dll
    │       │   Plotly.NET.dll
    │       │   ProteomIQon.dll
    │       │   ProteomIQon.pdb
    │       │   ProteomIQon.PSMBasedQuantification.deps.json
    │       │   ProteomIQon.PSMBasedQuantification.dll
    │       │   ProteomIQon.PSMBasedQuantification.exe
    │       │   ProteomIQon.PSMBasedQuantification.pdb
    │       │   ProteomIQon.PSMBasedQuantification.runtimeconfig.dev.json
    │       │   ProteomIQon.PSMBasedQuantification.runtimeconfig.json
    │       │   ProteomIQon.PSMBasedQuantification.xml
    │       │   ProteomIQon.xml
    │       │   System.Configuration.ConfigurationManager.dll
    │       │   System.Data.SQLite.dll
    │       │   System.Security.Cryptography.ProtectedData.dll
    │       │
    │       ├───cs
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───de
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───es
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───fr
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───it
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───ja
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───ko
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───pl
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───pt-BR
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───ru
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───runtimes
    │       │   ├───linux-x64
    │       │   │   └───native
    │       │   │           SQLite.Interop.dll
    │       │   │
    │       │   ├───osx-x64
    │       │   │   └───native
    │       │   │           SQLite.Interop.dll
    │       │   │
    │       │   ├───win
    │       │   │   └───lib
    │       │   │       └───netstandard2.0
    │       │   │               System.Security.Cryptography.ProtectedData.dll
    │       │   │
    │       │   ├───win-x64
    │       │   │   └───native
    │       │   │           SQLite.Interop.dll
    │       │   │
    │       │   └───win-x86
    │       │       └───native
    │       │               SQLite.Interop.dll
    │       │
    │       ├───tr
    │       │       FSharp.Core.resources.dll
    │       │
    │       ├───zh-Hans
    │       │       FSharp.Core.resources.dll
    │       │
    │       └───zh-Hant
    │               FSharp.Core.resources.dll
    │
    └───PSMStatistics
        └───net5.0
            │   Argu.dll
            │   BioFSharp.dll
            │   BioFSharp.IO.dll
            │   BioFSharp.Mz.dll
            │   Deedle.dll
            │   DynamicObj.dll
            │   FSharp.Core.dll
            │   FSharp.Stats.dll
            │   FSharpAux.dll
            │   FSharpAux.IO.dll
            │   Microsoft.ML.Core.dll
            │   Microsoft.ML.CpuMath.dll
            │   Microsoft.ML.Data.dll
            │   Microsoft.ML.DataView.dll
            │   Microsoft.ML.dll
            │   Microsoft.ML.FastTree.dll
            │   Microsoft.ML.KMeansClustering.dll
            │   Microsoft.ML.PCA.dll
            │   Microsoft.ML.StandardTrainers.dll
            │   Microsoft.ML.Transforms.dll
            │   MzIO.dll
            │   MzIO.MzML.dll
            │   MzIO.Processing.dll
            │   MzIO.SQL.dll
            │   Newtonsoft.Json.dll
            │   NLog.dll
            │   Plotly.NET.dll
            │   ProteomIQon.dll
            │   ProteomIQon.pdb
            │   ProteomIQon.PSMStatistics.deps.json
            │   ProteomIQon.PSMStatistics.dll
            │   ProteomIQon.PSMStatistics.exe
            │   ProteomIQon.PSMStatistics.pdb
            │   ProteomIQon.PSMStatistics.runtimeconfig.dev.json
            │   ProteomIQon.PSMStatistics.runtimeconfig.json
            │   ProteomIQon.PSMStatistics.xml
            │   ProteomIQon.xml
            │   System.CodeDom.dll
            │   System.Configuration.ConfigurationManager.dll
            │   System.Data.SQLite.dll
            │   System.Security.Cryptography.ProtectedData.dll
            │
            ├───cs
            │       FSharp.Core.resources.dll
            │
            ├───de
            │       FSharp.Core.resources.dll
            │
            ├───es
            │       FSharp.Core.resources.dll
            │
            ├───fr
            │       FSharp.Core.resources.dll
            │
            ├───it
            │       FSharp.Core.resources.dll
            │
            ├───ja
            │       FSharp.Core.resources.dll
            │
            ├───ko
            │       FSharp.Core.resources.dll
            │
            ├───pl
            │       FSharp.Core.resources.dll
            │
            ├───pt-BR
            │       FSharp.Core.resources.dll
            │
            ├───ru
            │       FSharp.Core.resources.dll
            │
            ├───runtimes
            │   ├───linux-x64
            │   │   └───native
            │   │           libFastTreeNative.so
            │   │           libLdaNative.so
            │   │           SQLite.Interop.dll
            │   │
            │   ├───osx-x64
            │   │   └───native
            │   │           libFastTreeNative.dylib
            │   │           libLdaNative.dylib
            │   │           SQLite.Interop.dll
            │   │
            │   ├───win
            │   │   └───lib
            │   │       └───netstandard2.0
            │   │               System.Security.Cryptography.ProtectedData.dll
            │   │
            │   ├───win-x64
            │   │   └───native
            │   │           FastTreeNative.dll
            │   │           LdaNative.dll
            │   │           SQLite.Interop.dll
            │   │
            │   └───win-x86
            │       └───native
            │               FastTreeNative.dll
            │               LdaNative.dll
            │               SQLite.Interop.dll
            │
            ├───tr
            │       FSharp.Core.resources.dll
            │
            ├───zh-Hans
            │       FSharp.Core.resources.dll
            │
            └───zh-Hant
                    FSharp.Core.resources.dll

[JonasLukasczyk]

Thank you for the issue. Can you provide the link to the ARC so I can try to reproduce the issue?

[LibraChris]

The arc in question is this one: https://git.nfdi4plants.org/maus/MSPracticalCourse2024 You should be invited as a guest in it as well. If I can be of further help please let me know.

[ZimmerD]

I think I experience similar issues. I just deleted several thousand files from an ARC and committed my changes. In the history the commit is visible (screenshot 1).

however when I select commit in the sidebar, all changes are still shown as uncomitted

[fejung]

Last week, I encountered similar issues while managing a modest set of 218 changed files, each of relatively small size. As a temporary workaround, I reverted to using the ARC Commander. However, it would be beneficial to have the capability to consistently use a single tool for such operations.

[JonasLukasczyk]

Hi everyone, I'm sorry but I can not reproduce this issue as I'm able to perofrm commits with 10.000 files. So to dig deeper into this issue I need your help. Please download this test ARC (https://git.nfdi4plants.org/jonas_bbs/many-files-test) and delete the workflows folder. The commit screen should take 2-3 seconds to load because it will list the deletion of 10000 files, but you should be able to perform a commit. If this also works on your machines then we have to look into the specific ARCs that encountered the issue in the first place.

Best Jonas

[JonasLukasczyk]

We were able to identify the issue: the windows git binary does not support filename lists that exceed a certain number of characters. So starting with version 0.0.32 such longs lists will be processed in batches instead of at once.