[Feature Request] Process visualisation - Githubissues

nfdi4plants / ARCtrl

Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

MIT License

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[Feature Request] Process visualisation #349

Open Freymaurer opened 2 months ago

Freymaurer commented 2 months ago

Goal: Visualisation of process graph displaying IOType cell values.

@HLWeil @Brilator @bfrommer

ARCtrl

[ ] Move query model API to ARCtrl.
[ ] Implement Graph based View on data model in ARCtrl.
[ ] .. find start nodes
[ ] .. find processes based on nodes

Visualisation

Preferred tool: Cytoscape
display as nodes and edges.
FileGraph: Displays Invstigation -> Study -> Assay graph
IOType graph: Displays input/output cell values in processes
Legend for process names for highlighting.

FileView

graph LR

i["ARC(Investigation)"]
s1["study 1"]
s2["study 2"]
s3["study 3"]

a1["assay 1"]
a2["assay 2"]
a3["assay 3"]

i --> s1
i --> s2
i --> s3

s1 --> a1
s2 --> a2
s2 --> a3
s3 --> a3

SampleView

WIP

Brilator commented 1 month ago

User feature request: "search for all information related to a specific sample within an ARC"

This probably asks for more than "just visualization", but would be cool to be able to search for and follow the graph for a single or set of sample(s).