search

nfdi4plants / dataplan

DataPLAN is the Data Management Plan (DMP) generator developed in DataPLANT
https://nfdi4plants.github.io/dataplan/
GNU General Public License v3.0
1 stars 3 forks source link

Better classification of the repositories and minimum information standards #25

Open xiaoranzhou opened 1 week ago

xiaoranzhou commented 1 week ago

I need suggestions and ideas to better connect the

  1. Type of data: Genetic data Other NGS (genomics) Cloned DNA Transcriptomics RNAseq Metabolomics Proteomics Plant phenotypic data Targeted assays (e.g. glucose and fructose content) Image datasets Models Code Excel
    1. The repositories: NCBI-GenBank NCBI-SRA (Sequence Read Archive) NCBI-GEO (Gene Expression Omnibus) EBI-ENA (European Nucleotide Archive) EBI-ArrayExpress EBI-Metabolights EBI-PRIDE (PRoteomics IDEntifications Database) EBI-BioImage Archive IDR (Image Data Resource) e!DAL-PGP (Plant Genomics & Phenomics Research Data Repository) Metabolomics Workbench PDB (Protein Data Bank) Chebi (Chemical Entities of Biological Interest) Other Endpoint Repositories:
  2. The minimal information standards: MIAPPE (Minimum Information About a Plant Phenotyping Experiment) MIxS (Minimum Information about any (X) Sequence) MigsEu (Minimum Information about a Genome Sequence: Eucaryote) MigsOrg (Minimum Information about a Genome Sequence: Organelle) MIMS (Minimum Information about Metagenome or Environmental) MIMARKSSpecimen (Minimal Information about a Marker Specimen: Specimen) MIMARKSSurvey (Minimal Information about a Marker Specimen: Survey) MISAG (Minimum Information about a Single Amplified Genome) MIMAG (Minimum Information about Metagenome-Assembled Genome) MIAMET (Minimum Information About a METabolomics experiment) MINSEQE (Minimum Information about a high-throughput SEQuencing Experiment) REMBI (Recommended Metadata for Biological Images) MIAPE (Minimum Information About a Proteomics Experiment) MIMix (Molecular Interactions)