search

nfdi4plants / nfdi4plants_ontology

An intermediate ontology for plants used by DataPLANT to fill the ontology gap
MIT License
7 stars 8 forks source link

Duplicate information terms from previous xref workflow #41

Closed Freymaurer closed 3 months ago

Freymaurer commented 1 year ago

When importing external terms for usage in the SwateDB the previous workflow was to create a "duplicate" nfdi4pso/dpbo term with an xref to the source term. Now we do not want to use this workflow anymore but we still have leftover terms from this practise in our ontology.

[Term]
id: DPBO:0000068
name: cell line
def: "A permanently established cell culture that will proliferate indefinitely given appropriate fresh medium and space. [ NCI On-line Medical Dictionary ] " []
comment: “[Definition Source: http://purl.obolibrary.org/obo/NCIT_C16403]"
xref: NCIT:C16403

https://github.com/nfdi4plants/nfdi4plants_ontology/blob/a9031e12ecd682ce58ff41f93b4070912d9cd442/dpbo.obo#L539

These should be made obsolete.

kdumschott commented 1 year ago

I will do a pass through and remove/obsolete all terms that fit this criteria.