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nfdi4plants / webqc

Web based raw data quality control tool (prototype)
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Tool throws an error #1

Open Brilator opened 9 months ago

Brilator commented 9 months ago

Tested with this fastqc file: https://git.nfdi4plants.org/brilator/Facultative-CAM-in-Talinum/-/blob/main/assays/Talinum_RNASeq_minimal/dataset/DB_097_CAMMD_CAGATC_L001_R1_001.fastq.gz

On macOS (Firefox and Safari) I get the following errors:

Screenshot 2023-10-10 at 16 35 41 Screenshot 2023-10-10 at 16 36 31
xiaoranzhou commented 8 months ago

Thanks a lot for the test and feedback. I try your file in chrome and firefox in windows and it worked. P.S: for some reason I had the same file in my computer date back to 2021! Can't remember why did I downloaded it. Time has passed by so fast!

If the error occurs after loading running for a while, then it might be not enough ram. It would be nice if you can tell the ram of your computer and try it with no other software running. My firefox consumed 1.5G RAM after the analysis. I think there will be (or have already) a Mac for debug in FZJ, I will check it next week.

newplot - 2023-10-20T165251 970 newplot - 2023-10-20T165255 129 image Console output [limits] WARNING: using default limits because limits file does not exist: /mnt/c/git/falco/Configuration/limits.txt [adapters] WARNING: using default adapters because adapters file does not exist: /mnt/c/git/falco/Configuration/adapter_list.txt [contaminants] WARNING: using default contaminants because contaminants file does not exist: /mnt/c/git/falco/Configuration/contaminant_list.txt [Fri Oct 20 17:01:46 2023] Started reading file DB_097_CAMMD_CAGATC_L001_R1_001.fastq.gz [Fri Oct 20 17:01:46 2023] reading file as gzipped FASTQ format

[running falco| | 0%] [running falco| | 1%] [running falco|= | 2%] [running falco|= | 3%] [running falco|== | 4%] [running falco|== | 5%] [running falco|=== | 6%] [running falco|==== | 8%] [running falco|==== | 9%] [running falco|===== | 10%] [running falco|===== | 11%] [running falco|====== | 12%] [running falco|====== | 13%] [running falco|======= | 15%] [running falco|======== | 16%] [running falco|========= | 18%] [running falco|========= | 19%] [running falco|========== | 21%] [running falco|=========== | 22%] [running falco|=========== | 23%] [running falco|============ | 24%] [running falco|============= | 26%] [running falco|============= | 27%] [running falco|============== | 28%] [running falco|=============== | 30%] [running falco|=============== | 31%] [running falco|================ | 32%] [running falco|================ | 33%] [running falco|================= | 34%] [running falco|================= | 35%] [running falco|================== | 37%] [running falco|=================== | 38%] [running falco|==================== | 40%] [running falco|==================== | 41%] [running falco|===================== | 43%] [running falco|====================== | 44%] [running falco|======================= | 46%] [running falco|======================= | 47%] [running falco|======================== | 48%] [running falco|======================== | 49%] [running falco|========================== | 51%] [running falco|========================== | 52%] [running falco|=========================== | 53%] [running falco|============================ | 55%] [running falco|============================ | 56%] [running falco|============================= | 57%] [running falco|============================= | 58%] [running falco|============================== | 59%] [running falco|============================== | 60%] [running falco|=============================== | 61%] [running falco|=============================== | 62%] [running falco|================================ | 63%] [running falco|================================ | 64%] [running falco|================================= | 65%] [running falco|================================= | 66%] [running falco|================================== | 67%] [running falco|=================================== | 69%] [running falco|=================================== | 70%] [running falco|==================================== | 72%] [running falco|===================================== | 73%] [running falco|===================================== | 74%] [running falco|====================================== | 75%] [running falco|====================================== | 76%] [running falco|======================================= | 78%] [running falco|======================================== | 79%] [running falco|======================================== | 80%] [running falco|========================================= | 82%] [running falco|========================================== | 83%] [running falco|========================================== | 84%] [running falco|=========================================== | 85%] [running falco|=========================================== | 86%] [running falco|============================================ | 87%] [running falco|============================================= | 89%] [running falco|============================================= | 90%] [running falco|============================================== | 92%] [running falco|=============================================== | 93%] [running falco|================================================ | 95%] [running falco|================================================ | 96%] [running falco|================================================= | 98%] [running falco|================================================== | 99%] [running falco|===================================================|100%] [Fri Oct 20 17:03:28 2023] Finished reading file [Fri Oct 20 17:03:28 2023] Writing summary to ./summary.txt [Fri Oct 20 17:03:28 2023] Writing text report to ./fastqc_data.txt [Fri Oct 20 17:03:28 2023] Writing HTML report to ./fastqc_report.html Elapsed time for file DB_097_CAMMD_CAGATC_L001_R1_001.fastq.gz: 102s