Closed kate-simonova closed 3 years ago
I solved the issue myself the problem was that I used GRCh38 and I did.t notice in README the following lines:
Homo sapiens version GRCh38.94: However, before running FuSeq for this annotation, users should clean the version information from the transcript names and gene names as described in Section 7.
Rscript FuSeq.R in=/home/me/test_output txfasta=/home/me/Homo_sapiens.GRCh38.cdna.all.fa sqlite=/home/me/Homo_sapiens.GRCh38.103.sqlite txanno=/home/me/Homo_sapiens.GRCh38.94.txAnno.RData out=/home/me/Out params=/home/me/FuSeq_v1.1.4_linux_x86-64/R/params.txt
txann was downloaded from the github page txfasta was downloaded from ensembl web-page along woth gft file used to build a db sqlite
Results in the following Error: