Error with ex_createAnno.R script

nghiavtr / FuSeq

GNU General Public License v3.0

32 stars 12 forks source link

Error with ex_createAnno.R script #20

Closed Troyee13 closed 3 years ago

Troyee13 commented 3 years ago

Hello,

When I am trying to build the Anno data with the following command Rscript ex_createAnno.R hg38_clean_cDNA.fa hg38.txAnno.RData I am getting an error Error: unexpected '<' in "<" Execution halted Done!

Any suggestion on how to resolve this issue?

nghiavtr commented 3 years ago

Hi @Troyee13,

Thank you for using FuSeq.

I haven't got this issue before, can you let me know the exact hg38 annotation version you are using?

Best, Nghia

Troyee13 commented 3 years ago

Thanks for the reply.

The error was because I didn't put excreate_Anno.R not within the R folder of FuSeq. Now it is running fine. I am using Ensembl version 104 annotation right now. I will be closing this issue.