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nghiavtr / FuSeq

GNU General Public License v3.0
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installing fails under ubuntu 16.04.6 LTS #4

Closed splaisan closed 5 years ago

splaisan commented 5 years ago

I cannot manage to build on my machine. Sailfish cannot be installed because the system boost is only 1.58. I also had errors dues to the Intel block dependency although I installed libtbb-dev The install.sh script fails at that stage and running from the latest build is also bad with error

./FuSeq: relocation error: /opt/biotools/FuSeq_v1.1.1_linux_x86-64/linux/bin/../lib/librt.so.1: symbol __vdso_clock_gettime, version GLIBC_PRIVATE not defined in file libc.so.6 with link time reference

Did someone manage to build FuSeq on ubuntu 16.04.6 LTS xenial?

nghiavtr commented 5 years ago

Hi @splaisan,

Thank you for your considering FuSeq in your research. Your issue is likely a common problem with Ubuntu, which is similar to the one here: https://github.com/nghiavtr/FuSeq/issues/1

If so, the solution is simply removing "librt.so.1" from the lib folder.

Best, Nghia

splaisan commented 5 years ago

This fixed it and it now runs the --help. Thanks