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nghiavtr / FuSeq_WES

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how to extract the supported bam files? and can it generate the VCF files of the supported fusion? #7

Open genebial opened 1 year ago

nghiavtr commented 1 year ago

hi @genebial,

Fuseq_WES does not export the supported bam file as the result. As my understanding, you are trying to visualize the gene fusion, if so, you can consider getting the *.BEDPE file from the output of Fuseq_WES. A discussion on this issue is here https://github.com/nghiavtr/FuSeq_WES/issues/5

Nghia

genebial commented 1 year ago

cause I wanna see if the breakpoints pose in the exons, that is important, like the results displayed by https://github.com/OpenGene/GeneFuse