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ngless-toolkit / ngless

NGLess: NGS with less work
https://ngless.embl.de
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samtools_sort API change #82

Closed unode closed 6 years ago

unode commented 6 years ago

Instead of:

samtools_sort(samfile, by_name=True)

implement

samtools_sort(samfile, by={name})

with

samtools_sort(samfile, by={coordinate})

being also allowed (and the default).

Originally posted by @luispedro in https://github.com/ngless-toolkit/ngless/commit/56c967d2687c94fe2a0293fc50db113504bcba4d#commitcomment-30588453