ngs-fzb / MTBseq_source

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
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samples.txt file #63

Closed sajidjan80 closed 3 years ago

sajidjan80 commented 3 years ago

@cutpatel please help in TBjoin I have successfully analyzed more than 200 samples from multiple TBfull steps, each sample is located in its separate folder starting from 700 to 900. I am sorry but I can't write samples.txt file for TBjoin. Some of my files of sample 724 are /724/Called/724_ERR3335724.gatk_position_variants_cf4_cr4_fr75_ph4_outmode000.tab /724/Called/724_ERR3335724.gatk_position_uncovered_cf4_cr4_fr75_ph4_outmode000.tab /724/Position_Tables/724_ERR3335724.gatk_position_table.tab

cutpatel commented 3 years ago

See #53.