The following three deletions should in fact only be one (the first one):
chr1 47190 . G A 100 PASS AF=0.5;pl=2;mt=SUBSTITUTE
chr1 48202 . TGGG T 100 PASS AF=1.0;pl=3;mt=DELETE
chr1 48203 . GGG G 100 PASS AF=1.0;pl=3;mt=DELETE
chr1 48204 . GG G 100 PASS AF=1.0;pl=3;mt=DELETE
chr1 48236 . A C 100 PASS AF=1.0;pl=3;mt=SUBSTITUTE
nh13
commented
11 years ago
See: http://sourceforge.net/mailarchive/message.php?msg_id=30649105
The following three deletions should in fact only be one (the first one): chr1 47190 . G A 100 PASS AF=0.5;pl=2;mt=SUBSTITUTE chr1 48202 . TGGG T 100 PASS AF=1.0;pl=3;mt=DELETE chr1 48203 . GGG G 100 PASS AF=1.0;pl=3;mt=DELETE chr1 48204 . GG G 100 PASS AF=1.0;pl=3;mt=DELETE chr1 48236 . A C 100 PASS AF=1.0;pl=3;mt=SUBSTITUTE